DY304678

Overview
NameDY304678
Unique NameDY304678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length939
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304678 vs. ExPASy Swiss-Prot
Match: YAM3_SCHPO (UPF0673 membrane protein C1F5.03c OS=Schizosaccharomyces pombe GN=SPAC1F5.03c PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.646e-16
Identity = 63/222 (28.38%), Postives = 105/222 (47.30%), Query Frame = 3 
Query:  201 YFLAKKGA------AVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKA---------------VNDYGLXXXXXXXXXXXXXXXXXXXXXMIEGGRVVESDAVVLALGPWSGKIELLASMFKVSGSKGHSIILN 803
            YFLA   +       +TL E + +A AASGKA GFL+L+W  G   SSLA  S+NLH+ L+++ +G + +GYRAL T S+   E+ Q   K       + PS V+    + T +G+ + + QVHP  F   +  +A               V++  +                      +     +E+  +++A GPW+ +   L    ++SG++ HSI ++
Sbjct:   21 YFLAHHPSFNRDRDTITLFESAGIASAASGKASGFLSLEW-HGPSTSSLAALSYNLHKELSDQYDGVNKWGYRALDTWSIKADENCQQPDKLPEGIEWIAPSIVE----NVTRLGNKKNSGQVHPYKFCHAIYEEASKVANVTLVKGHVLSVDENEVEYRLIGDDYAPDEEEEITSAEELHTIHSMEATHIIVAAGPWTPQ---LIPNLRISGARIHSITID 234
The following BLAST results are available for this feature:
BLAST of DY304678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YAM3_SCHPO1.646e-1628.38UPF0673 membrane protein C1F5.03c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YG03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304678 ID=DY304678; Name=DY304678; organism=Citrus clementina; type=EST; length=939bp
CAACATTGCTCGCGCCATCGTCAGCTCCCACATATCTTCCTGGTCTCCGA
CTGACTCTAATAGGCTCTAGAAAATTGTCCAAAACAACCACCTTCATCAA
CTGCTCCGCAGCACAAGCATCACCTCCCATGGACGGCCAGCGCCACTCCA
AAAAACACGTGGCAGTTTGCGGTGGCGGCATCATCGGTGTTTGCACTGCT
TACTTCTTGGCCAAAAAAGGCGCCGCTGTCACACTCATTGAGAAATCCTC
CGTGGCATGCGCCGCATCCGGGAAAGCCGGAGGATTCCTCGCTTTAGACT
GGTGCGATGGTGGGCCTCTCTCTTCATTAGCCCGTGCGAGCTTCAATCTC
CACCGTTCGCTGGCCGAAGAACTCAACGGCCCAGACAATTACGGGTACCG
AGCGCTTACGACTCTCAGCCTCACCGTAACGGAATCGCAGCAAAGCGGTT
CGAAACCCTCAAATAAGGCCAACTCTCTTATCCCTTCGTGGGTTGATGGG
CCGGCTAGAAGTCCGACTACAATTGGGTCGACCCAGACAACGGCCCAGGT
TCATCCGCAGTTGTTTACAAAAACATTGCTGAACAAAGCTGTGAATGATT
ATGGACTGGAGGTGGTGATAGGGAAAGTGGAGCGCGTGGGTGTTGGCGAA
GGAGGGCGAGTTGAGTCGGTAATGATAGAGGGTGGGCGAGTTGTTGAGTC
GGACGCTGTCGTTTTGGCGCTTGGGCCGTGGTCTGGTAAAATTGAATTGT
TAGCTTCCATGTTCAAAGTGTCCGGGTCCAAGGGTCATAGTATCATTTTG
AACCCAAAGAAGCCGATGCCATAACCCCCCAGGCACTGTTTTTGAGTAAT
ATCCCGGTCAAGGGAAAGGGTGGCAAGCCCATTGAACCCTGAACGGTATC
CTCCCCCTTAAAGGGGAGGGTTTACTTGGTTGGGAAAGT
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