DY304684

Overview
NameDY304684
Unique NameDY304684
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length983
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304684 vs. ExPASy Swiss-Prot
Match: Y1295_ARATH (Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.259e-46
Identity = 93/225 (41.33%), Postives = 141/225 (62.67%), Query Frame = 1 
Query:  220 SGDLSQRQIQSEPASGVVAPSQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKIITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAKVEIFEKWVNEPNFET*KPYN-DKYGAMPGEFGLGNQP**AYGDLYSPLSKVFFCKGWGIKL 891
            SG   ++Q Q +P +         +LR  P+++H+PE+Y+D+ LD+SPS+F+SLERYLP  +L   R +K  FMR++L++Y P  ER RV RH++YR KI+++YQ LH E+Y L   +FF P F+ A    +E +FRS + E  PG+FTFEM +P+FCE+LLA+VE  EKWV +      +P   + +G +  +FG  +       D  SP+++V F +  G  L
Sbjct:   15 SGKQPEQQQQQQPRASSGNGEARLKLRRTPNEEHEPENYEDLPLDYSPSLFTSLERYLPEQLLNSTRIDKASFMRDLLLRYSPDTERVRVLRHKEYRDKIMSSYQRLHGEIYTLDPSSFFAPSFLGAFSRKSEPNFRSSMVESYPGIFTFEMFKPQFCEMLLAEVEHMEKWVYDSRSTIMRPNTMNNFGVVLDDFGFDSMLQKLVDDFISPIAQVLFPEVCGTSL 239
The following BLAST results are available for this feature:
BLAST of DY304684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1295_ARATH1.259e-4641.33Uncharacterized PKHD-type hydroxylase At1g22950 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YG11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304684 ID=DY304684; Name=DY304684; organism=Citrus clementina; type=EST; length=983bp
CAGACTAGTTTTTCCTTCACGTCTCTGATATAGATTACAAACCACCAACA
TTAATTTGTTCAAAATTCCGATTTATCGTCTAAATCGTAGTATATTCCAC
AAATGCTCCATTTTATAGTCTTAAATTAATCTGAAATTATCTCCCTGCTC
CTCGCCATGTCCTCCGGGGATCGCCGGGAAGCATCTCCGGCGGCCGGAGA
GGTGAAAAACGGCGTCGTTTCAGGAGATTTGAGCCAGCGGCAGATACAGT
CGGAACCGGCATCGGGTGTGGTGGCGCCGAGCCAGAACCAGAGACTGAGG
CTGAACCCTAGCAAGGACCACAAGCCGGAGAGCTATGATGATATGCAGTT
GGACTTCAGTCCGTCGATTTTCAGCTCTTTGGAGAGGTACTTGCCCCCAC
CTATGCTGGGTCTGAACAGAGAAGAGAAGGTGAAATTCATGAGAGAAATT
CTAATGAAGTATTTGCCGCAAGGGGAAAGGACCAGAGTTCAGAGACATAG
GGATTACCGGCAGAAGATAATAACTAACTATCAGCCTCTACATCGAGAAT
TATACAATCTGCACATTGGAAACTTCTTTGTCCCTCCATTTGTCAAAGCA
ATCCAAGACAACACAGAGGAAAGCTTTAGAAGTATAATCTCAGAACCCTC
TCCAGGTGTATTTACTTTTGAGATGCTTCAGCCACGTTTCTGTGAATTGT
TGTTAGCAAAAGTAGAAATTTTTGAAAAGTGGGTTAATGAACCAAATTTC
GAAACATGAAAACCATACAATGACAAGTATGGGGCAATGCCTGGTGAATT
TGGCCTGGGAAACCAGCCTTGATAAGCTTATGGAGACTTATATTCCCCTC
TATCTAAAGTTTTCTTTTGCAAAGGTTGGGGGATCAAACTTGGGAACCCC
AACCTGGTTTTTGTTGTTTGAATTTGGTTAAAAAAATAAAACCTTTGTTT
CCAAGGATTTCCTGGTGAATAAAATCTAAAATT
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