DY304688

Overview
NameDY304688
Unique NameDY304688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length963
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 5.970e-102
Identity = 184/235 (78.30%), Postives = 213/235 (90.64%), Query Frame = 1
Query:  241 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHAKLFMVKKSTGKLTNFCRGQTKP 942
            MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+  SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAG+SPKCRDLVL+NG L+PL+A+ NEH KL M++ +T  L+NFCRG+ +P
Sbjct:    1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP 235          
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 360.918 bits (925), Expect = 6.178e-99
Identity = 178/236 (75.42%), Postives = 212/236 (89.83%), Query Frame = 1
Query:  241 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDN--KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHAKLFMVKKSTGKLTNFCRGQTKP 942
            MSLRPN+RTE RRS+YKVAVDAEEGRRRREDNMVEIRKNKREE+LLKKRREGL   Q   ++AA+ +  KKLE+LP ++AGVWSDD ++QL+ TTQFRKLLSIER+PPI EVIQSGVVPRF+EFL+RDD+PQLQFEAAWALTNIASGTSENT+VVID+G+VPIF+RLLSSP+DDVREQAVWALGN+AG+SPK RDLVL +G L+ L+A+FNE AKL M++ +T  L+NFCRG+ +P
Sbjct:    1 MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFPSTAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQP 236          
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 8.350e-96
Identity = 174/235 (74.04%), Postives = 209/235 (88.94%), Query Frame = 1
Query:  241 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTN-SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHAKLFMVKKSTGKLTNFCRGQTKP 942
            MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL+KKRREG+QA Q   + SAA  +KKL+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPRF+EFL ++D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVWALGNVAG+SP+CRDLVL  G L+PL+ + NEHAKL M++ +T  L+NFCRG+ +P
Sbjct:    1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQP 235          
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 340.117 bits (871), Expect = 1.128e-92
Identity = 172/241 (71.37%), Postives = 204/241 (84.65%), Query Frame = 1
Query:  241 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAH-------QPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHAKLFMVKKSTGKLTNFCRGQTKP 942
            MSLRP+ R EVRRS+YKVAVDA+EGRRRREDNMVEIRK++REESLLKKRR+GL A         PL   ++   +KLE LPAMV  V SDD  +QL+ATTQFRKLLSIERSPPI EVI +GVVPRFI FL R+D+PQLQFEAAWALTNIASGTS+NT+VV++ GAVPIFV+LLSSP++DVREQAVWALGNVAG+SPKCRDLVL++GGL PL+ + NEHAKL M++ +T  L+NFCRG+ +P
Sbjct:    1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAAAAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQP 241          
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 326.635 bits (836), Expect = 1.291e-88
Identity = 163/238 (68.49%), Postives = 198/238 (83.19%), Query Frame = 1
Query:  241 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD----NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHAKLFMVKKSTGKLTNFCRGQTKP 942
            MSLRP+A+TEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREE+L KKR     A    T     D    N+  ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVVPR ++FLSRDDFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQAVWALGNVAG+SPKCRDLVLS G + PL+++FNE+ KL M++ +T  L+NFCRG+  P
Sbjct:    1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPP 238          
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMAB_DICDI (Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.532e-68
Identity = 131/230 (56.96%), Postives = 178/230 (77.39%), Query Frame = 1
Query:  259 ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHA--KLFMVKKSTGKLTNFCRGQTKP 942
            ++ E R+S+YK ++D++E RR+RE+  + IRKNKREESLLKKR + +    P+   + + N++LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL   DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+AG+S  CRDLVLS+  L PL++     A  K+ MV+ +T  L+NFCRG+ +P
Sbjct:    4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLI-NQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQP 232          
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMA1_SCHPO (Importin subunit alpha-1 OS=Schizosaccharomyces pombe GN=cut15 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.322e-52
Identity = 117/230 (50.87%), Postives = 152/230 (66.09%), Query Frame = 1
Query:  268 EVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKK-----LE-SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHAKLFMVKKSTGKLTNFCRGQ 933
            E RR  YK      A+E RRRRE   +EIRK KREE+L  KRR  +   +P   +  L+  K     LE  LP ++  ++SDD   Q+ AT +FRK LS E +PPI +VI +GVVPRF+EFLS ++   L+FEA+WALTN+ASG+S  T VV++  AVP+FV LLSS   DVREQAVWALGN+AG+SP CRD VL  G L PL+     + +L M++ ST  L+N CRG+
Sbjct:   10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENL-NKRRNLVDVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEFLSHEN-NLLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGK 237          
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMA2_SCHPO (Importin subunit alpha-2 OS=Schizosaccharomyces pombe GN=imp1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.262e-51
Identity = 114/233 (48.93%), Postives = 148/233 (63.52%), Query Frame = 1
Query:  274 RRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLE-------SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHAK-LFMVKKSTGKLTNFCRGQTKP 942
            RRS++K      A+E RR+RE+  +EIRK KREESL K+R         +      D  +++         P + A V SDD  +QL A T+FRK LS E  PPI++VI  GVV RF++FL  +    LQFEAAWALTNIASGT++ TR+V+D GAVP F++LLSSP  DVREQ VWALGN+AG+S  CRD VL NG L PL+      A  + M++ +T  L+N CRG+  P
Sbjct:    9 RRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFLESEHH-LLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPP 240          
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMA7_MOUSE (Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 5.303e-50
Identity = 112/232 (48.28%), Postives = 152/232 (65.52%), Query Frame = 1
Query:  274 RRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHAKLFMVKKSTGKLTNFCRGQTKP 942
            R   YK  A++ EE RRRRE+  +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFEAAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AG+S  CRD VL+   L PL+    +  +L M + +   L+N CRG+  P
Sbjct:   13 RMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPP 244          
BLAST of DY304688 vs. ExPASy Swiss-Prot
Match: IMA7_BOVIN (Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.926e-50
Identity = 112/232 (48.28%), Postives = 152/232 (65.52%), Query Frame = 1
Query:  274 RRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGESPKCRDLVLSNGGLMPLVAKFNEHAKLFMVKKSTGKLTNFCRGQTKP 942
            R   YK  A++ EE RRRRE+  +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFEAAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AG+S  CRD VL+   L PL+    +  +L M + +   L+N CRG+  P
Sbjct:   13 RMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPP 244          
The following BLAST results are available for this feature:
BLAST of DY304688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
IMA1A_ORYSJ5.970e-10278.30Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
IMA_SOLLC6.178e-9975.42Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA1_ARATH8.350e-9674.04Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1B_ORYSJ1.128e-9271.37Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA2_ARATH1.291e-8868.49Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMAB_DICDI2.532e-6856.96Importin subunit alpha-B OS=Dictyostelium discoide... [more]
IMA1_SCHPO3.322e-5250.87Importin subunit alpha-1 OS=Schizosaccharomyces po... [more]
IMA2_SCHPO1.262e-5148.93Importin subunit alpha-2 OS=Schizosaccharomyces po... [more]
IMA7_MOUSE5.303e-5048.28Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 ... [more]
IMA7_BOVIN6.926e-5048.28Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YG16RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304688 ID=DY304688; Name=DY304688; organism=Citrus clementina; type=EST; length=963bp
ATCATCAATTTCATTCGAATAAAAATCCAAAATCCGCCTCATCGTCATCT
GTCGTCTCGTCTCTCGCACTCTTTTCCTCAGTACATCGTTGCTGCTCTCT
TTCCTTTCCCTCTTTTCTTTCTTGCAAAACCAACCGATCAGATTCAGCGG
CTATCTCAAAGCATTTTAGTGTTTCCGATTACTAGATTCGATTAGAATTT
CTAAACACACACGCACAAAAAGAAAGAAAGAAAAAACGACATGTCGCTTA
GACCGAACGCAAGAACCGAGGTTCGCAGGAGCAAATACAAGGTAGCCGTA
GATGCGGAAGAGGGACGGAGGAGGAGAGAAGACAATATGGTGGAGATCCG
AAAGAACAAGAGAGAAGAAAGCTTGCTCAAGAAGCGACGCGAGGGACTTC
AAGCTCACCAACCACTTACCAACTCCGCCGCTCTCGATAACAAGAAGTTA
GAAAGTCTTCCAGCTATGGTTGCAGGCGTTTGGTCTGATGATAGAAACAT
ACAGCTCGACGCAACCACTCAGTTCCGGAAGTTACTCTCAATAGAACGCA
GTCCTCCAATTAATGAAGTTATACAATCCGGTGTTGTTCCTCGCTTTATA
GAGTTTCTTTCAAGGGATGACTTTCCACAGCTTCAGTTTGAGGCTGCCTG
GGCTCTTACAAATATTGCTTCTGGAACATCAGAAAACACCAGAGTGGTGA
TTGATCATGGGGCTGTCCCCATATTTGTCAGACTTCTAAGTTCTCCCACC
GATGATGTTCGTGAGCAGGCTGTTTGGGCATTGGGAAATGTTGCTGGTGA
ATCACCTAAATGCCGTGATCTTGTTCTTAGTAATGGGGGCTTGATGCCAT
TGGTGGCAAAATTCAATGAGCATGCCAAGCTTTTTATGGTGAAAAAAAGC
ACAGGGAAATTAACGAATTTCTGCAGGGGGCAAACCAAACCCTTTGTTTA
AACAAAAAAAGGG
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