DY304690

Overview
NameDY304690
Unique NameDY304690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 3
Query:  558 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAEL 767
            PA K              HV S   C VCKE + LG   R++PC H++H+ CI+PWL+  +SCPVCR  L
Sbjct:  206 PADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.149e-12
Identity = 38/118 (32.20%), Postives = 50/118 (42.37%), Query Frame = 3
Query:  558 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAELPXXXXXTPEDSSKALSIWWLPGGGFALGKNEGRESGGRNRKKKDFPLG 911
            PA K              HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR  L      T            L G  F+   +    S   N      PLG
Sbjct:  204 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPG--------LTGVSFSSSSSSSSSSSPSNENATWSPLG 313          
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.501e-12
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 3
Query:  612 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAEL 767
            HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR  L
Sbjct:  220 HVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.344e-12
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 3
Query:  558 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAEL 767
            PA K              HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR  L
Sbjct:  207 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.367e-12
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 3
Query:  612 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAEL 767
            HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR  L
Sbjct:  221 HVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.450e-12
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 3
Query:  612 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAEL 767
            HV     C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR  L
Sbjct:  221 HVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.729e-12
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 3
Query:  633 CAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAELPXXXXXTPEDSSKALS 815
            CAVCK+   +G   +++PC H YH DCI+PWL  RNSCPVCR +L        E+  K  S
Sbjct:  257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKRTS 317          
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.271e-11
Identity = 32/71 (45.07%), Postives = 36/71 (50.70%), Query Frame = 3
Query:  558 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAELP 770
            PA+KA                    C VC   FE     REMPCKH++H  CILPWL   NSCP+CR ELP
Sbjct:   54 PAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELP 124          
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.660e-11
Identity = 33/86 (38.37%), Postives = 42/86 (48.84%), Query Frame = 3
Query:  513 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAELP 770
            L  +D T   +    PASK                 +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR ELP
Sbjct:   39 LGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELP 124          
BLAST of DY304690 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.831e-11
Identity = 32/86 (37.21%), Postives = 42/86 (48.84%), Query Frame = 3
Query:  513 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRAELP 770
            L  +D T   +    PA+K                 +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR ELP
Sbjct:   39 LGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELP 124          
The following BLAST results are available for this feature:
BLAST of DY304690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RN126_MOUSE8.800e-1342.86RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN126_HUMAN1.149e-1232.20RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_XENTR1.501e-1250.00RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_BOVIN3.344e-1241.43RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
R126A_XENLA4.367e-1250.00RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
R126B_XENLA7.450e-1248.08RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
CIP8_ARATH9.729e-1247.54E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_DANRE1.271e-1145.07E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
RN181_XENLA1.660e-1138.37E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN181_XENTR2.831e-1137.21E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YG18RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304690 ID=DY304690; Name=DY304690; organism=Citrus clementina; type=EST; length=962bp
CACAATCTTAAACAAGAAAAAGTCTTCGGTTCATTAAACAAATGTCATCA
TCGCCGACGACGACGGAGTCGTTTTGGTGCTACAGGTGCCTCCGCATCGT
CAGCTCGCTATCCCAATTCGACGGCGACACCACTTGCCCTCACTGCCACG
GTGGCTTCATAGAACAAATCGAGACAGAAGTGATCACCACCACACAAACA
CAATCATCATCGCATGACCACATCAGCCGTCCGTTTTCGACAGCCGTCAT
GTTGGGTCAAGATTCCGGTCAAAGAACAACCTTGAGTTTCCAGCGAAGAA
GCCGCCGCCGGGGAAACTCCCGCAGCCAACAGCTTGATTTCTTCAACCCG
GTCATCGTCCTACGCGGCAACAATAATGAAGAAAACAGTAGCGGCAGCAG
CTTTGATCTGTACTATGAGGACGGTCAGGGGTCAGAGTCAACTCTAAGGC
CGATACCAGAAAGAGTTTTAGGGTTCTTGATGGATTCAGGATTTCATCTG
TTACTTCATCAACTGTCTCAGATTGATCTAACGGCGCTATCCCGGCCGGA
GAATCTGCCGGCATCAAAAGCTTCGATCGAGTCGATGCCAAGCATAGAGA
TTTCGTCAGGCCACGTAAGTTCAGAGTGTCACTGTGCAGTATGTAAAGAG
GCGTTTGAGCTTGGAAACGAGGCGAGAGAGATGCCGTGCAAGCATATATA
CCATGAAGATTGTATTCTCCCGTGGCTCAAAATGCGAAACTCGTGCCCGG
TTTGCAGGGCAGAGCTACCAGCAGCCGCAGCCGCCACCCCAGAGGATTCC
TCGAAGGCGCTGTCTATATGGTGGCTGCCGGGAGGTGGGTTTGCATTGGG
AAAAAATGAAGGGCGGGAAAGTGGGGGCCGGAACCGCAAAAAAAAGGATT
TTCCATTGGGTTTGGCGGAAATAAAGGAAAAATCAAACTTACCCGTACCA
GGGGTTTTTCCC
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