DY304691

Overview
NameDY304691
Unique NameDY304691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304691 vs. ExPASy Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.231e-39
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 1 
Query:  184 GFTNLDENLLFEVLKHADARTLARAACVNKLWHKTAQDERLWELICTRHFANVGCATQQLRSVVLALGGFRRLHSLYLHQLPRLPPGAPPSSSKWNPLPRVMGPKTPAHWGRDEVHLSLSLLSVRYYEMMT 576
            GF+NLDENL++EVLKH DA+TLA ++CV+K+WHKTAQDERLWELICTRH+ N+GC   QLRSVVLALGGFRRLHSLYL  L +             P PR       A +G+DE+ L+LSLLS+RYYE M+
Sbjct:   31 GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSK-------------PNPR-------ARFGKDELKLTLSLLSIRYYEKMS 141
[Close]
BLAST of DY304691 vs. ExPASy Swiss-Prot
Match: GID2_ORYSJ (F-box protein GID2 OS=Oryza sativa subsp. japonica GN=GID2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.835e-27
Identity = 61/127 (48.03%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:  193 NLDENLLFEVLKHADARTLARAACVNKLWHKTAQDERLWELICTRHFANVGCATQQLRSVVLALGGFRRLHSLYLHQLPRLPPGAPPSSSKWNPLPRVMGPKTPAHWGRDEVHLSLSLLSVRYYEMM 573
            +L E+L+FEVL+ A+ARTLA AACV++ W + A+DERLWE  C R +AN+G + +QLR+VVL+LGGFRRLH++Y+  L     G P    +  P         P   GRD+V LSLSL S+ +++ M
Sbjct:   75 DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSLGGFRRLHAVYIRPLQWRGAGVPRQQGRRQP---------PVRLGRDQVQLSLSLFSIGFFQNM 192
The following BLAST results are available for this feature:
BLAST of DY304691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GID2_ARATH5.231e-3961.83F-box protein GID2 OS=Arabidopsis thaliana GN=GID2... [more]
GID2_ORYSJ7.835e-2748.03F-box protein GID2 OS=Oryza sativa subsp. japonica... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YG19RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304691 ID=DY304691; Name=DY304691; organism=Citrus clementina; type=EST; length=933bp
CCCATCCATCCCCACCAACACTTTCCATTTCCTCTCTCTCTTTCTCTGCC
TCTCCAATTTTACTTTATGAAGCGTATGGGTTTTGATTCTCCGGTCACCG
CCGAAGACAAGCAAAAGATGAAGAAAGTCAAACAAGAGGAGGAGAAGGAG
AAGGAGAAAGAGGGAGAGCAATCCAAAGAAACTGGCTTCACAAATCTGGA
CGAGAACCTTCTGTTCGAGGTGTTGAAACACGCGGACGCCAGGACTTTGG
CGCGGGCGGCCTGCGTCAACAAGCTCTGGCACAAGACGGCTCAAGACGAG
CGCCTCTGGGAGTTGATCTGCACCCGCCACTTCGCTAACGTTGGGTGTGC
TACCCAACAGCTGAGATCCGTGGTCCTGGCTCTCGGTGGCTTCCGTCGCC
TTCACTCCCTCTACCTCCACCAGCTTCCCAGGCTGCCACCCGGCGCTCCG
CCTTCTTCCTCCAAGTGGAATCCTCTCCCGCGCGTCATGGGCCCCAAGAC
CCCGGCCCACTGGGGGAGAGACGAGGTCCATCTCTCCTTGTCTCTGCTTT
CCGTTCGTTACTATGAGATGATGACTATTAGGGATCTAACCAAGCAATGA
TATATTTACTCCATCTTCCTTGTCTATCTACCTTCTATCTCTGTTTTTTT
TCCCCCTTTTTGGCTGGTGCGGACGATGCGTTTTTTGGGACGAACACAAG
CAGAAAGCAACAAAAAGGGGTCCAGTTGGTGTTGAATGTCTGTTAGTGGC
CGCGTTTTGTGGTTGTTTCGGTGGGCTGATTATCAGTACGTAAAAAAACA
AAGTGATGGGTTTCCGTATAGAATTAAAATCTAAAAAAAACCAACGTCCC
CTCAAAATTATAAGGAAGACTTTTTTGTCCTATTAACAAATATAATAATC
CTTGCGTCCCCACCAAATTTTCTTTTTGAAAAC
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