DY304692

Overview
NameDY304692
Unique NameDY304692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304692 vs. ExPASy Swiss-Prot
Match: EXOS5_HUMAN (Exosome complex exonuclease RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.358e-15
Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 3 
Query:  159 EMEVDRADGRNPN----QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAV 506
            ++  +   G +P      LR  AC  ++L R  GSAS+ QGDT VLA VYGP       E   KA++EVI +P+ G  G  EK  E +++ T +++ + T++P T+ +V++QVV D G++
Sbjct:   10 KIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSL 129
[Close]
BLAST of DY304692 vs. ExPASy Swiss-Prot
Match: EXOS5_MOUSE (Exosome complex exonuclease RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.800e-15
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 3 
Query:  201 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAV 506
            LR  AC  ++L R  GSAS+ QGDT VLA VYGP       E   KA++EVI +P+ G  G  EK  E +++ T +++ +  ++P T+ +V++QVV D G++
Sbjct:   28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSL 129
The following BLAST results are available for this feature:
BLAST of DY304692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EXOS5_HUMAN1.358e-1537.50Exosome complex exonuclease RRP46 OS=Homo sapiens ... [more]
EXOS5_MOUSE8.800e-1541.18Exosome complex exonuclease RRP46 OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YG20RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304692 ID=DY304692; Name=DY304692; organism=Citrus clementina; type=EST; length=924bp
CTTTCTTGACTTCTTTATCGTGAAAGAGAGAACGACACACACCTGCGCCC
ACGCTGCAGCCGCTGCCGCCGTCGCTAACTAACGCCGACGCCGACTCCCG
AGCCTACGGTCTAGTTTCTCTAACCCTAAGCTAACAAAACAATCCGAGGA
TAACAGGAGAAATGGAGGTCGATAGAGCTGATGGGCGTAACCCTAATCAA
TTGAGACCACTTGCTTGCTCTTGCAGCATCCTTCACCGTGCACATGGCTC
TGCCAGTTGGTCTCAAGGAGACACAAAAGTGCTGGCTGCTGTTTACGGAC
CCAAAGCTGGAACAAAGAAGAATGAAAATCCTGAGAAGGCTAGCATTGAA
GTCATTTGGAAACCTAGAACTGGACAGATTGGGAAACCGGAAAAAGAGTA
CGAGATAATATTGAAGCGGACTTTGCAGAGCATATGCATTTTGACTATCA
ATCCAAATACCACAACCTCAGTTATAATTCAGGTCGTCCATGATGACGGT
GCTGTATCCTTGATAATAAATGCATTTTTGTATAACATTTTTTTTTTTTT
TTGCTTCCACCAATAAAATGCAATGTGAATTGACTATGTATCCTATGGAA
ATGACTTTACTTCTTTGGTTTTACTTTGACCCGCAATGGTTGTTTCTTGA
CTGCACCTTGTATAGCTTCTACCTTGTGCCATAAATGCAGCATGTGCTGC
CCTTGTGGATGCTGGAATTCCTATGAAGCATCTTGCTGGTAGTTTATTAT
GAAGACTTATGTTGCAATATGTTGTTGCTCGGCAGAGAGTGGATATTGTA
TACCGGGATCCACTAAAGTTAAAAGAACAACAAAATGAGGGGCCTTGCTT
ATTTAGTCTTTCCAAACTCAATACCCTCGGTCCTTTCCGGAGGGTCATCA
CTTGGGGCAAAGGGGAACCCAGGG
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