DY304693

Overview
NameDY304693
Unique NameDY304693
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304693 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.427e-46
Identity = 114/295 (38.64%), Postives = 165/295 (55.93%), Query Frame = 2 
Query:    8 EVASKMDTEEPKVYVAVGNDLQDGYRTLDWTLRKWKAQSISIVILHVTYNISIKDFVYTPFGKLPATSLSDEKLEILKKYEQGKTDNLLSKYMGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMKPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTRAIEPNAAKPIHSKMNVCKKTEFLK 892
            EV ++  +   KVY+AVGND+Q+GY+T+ W L+KW    ISIV+LH+  NIS +DFVYTPFGKLPA+S+S+EKL++L+KYE  K D LLSKY+ FCGKV                                 LS      GKS++A+SGS++V+ + P++CE +IICGGK+VSLK + +                   N  +   KMF   GRN +R    S G + D   S S+W+  +QEIE YFQ L S NL   +  E  + + + +  + + A  +   M+V +K E+++
Sbjct:   10 EVEAESGSRMEKVYIAVGNDVQEGYKTIHWALKKWNNIPISIVLLHLC-NIS-QDFVYTPFGKLPASSVSEEKLQVLRKYEDQKIDKLLSKYITFCGKV-------------------------------CPLSVNFVLFGKSKSAISGSFYVYQNKPEFCEFYIICGGKMVSLKNDVN---------------NNNSNIRSWIGKMFHDPGRNLDR----SSGNNDDPTASGSSWDKNLQEIENYFQQLLSLNL---AEEETENVVEEEQEDDDDVALNVLQHMDVAEKLEYVR 249
The following BLAST results are available for this feature:
BLAST of DY304693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PUB50_ARATH2.427e-4638.64Putative U-box domain-containing protein 50 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YG21RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304693 ID=DY304693; Name=DY304693; organism=Citrus clementina; type=EST; length=893bp
CCTGACTGAGGTAGCCAGCAAGATGGATACTGAAGAGCCAAAAGTCTATG
TCGCAGTTGGAAATGATCTCCAAGATGGATACAGGACTTTGGATTGGACA
CTTCGAAAATGGAAAGCTCAGTCCATCTCCATTGTCATTCTTCACGTCAC
CTATAACATCTCCATTAAGGATTTTGTTTACACCCCATTTGGCAAGCTTC
CTGCAACTTCTTTGAGCGATGAGAAGCTTGAAATCTTGAAGAAGTATGAA
CAAGGAAAGACTGACAATCTGCTCTCCAAGTACATGGGTTTCTGTGGCAA
GGTTAAGGCGGAGATACTGAAAGTCGAGAAATCTGATGAACCTGTTCACA
AGCTCATACTAGATTTGGTCTCACGATTGACAATAACCAAATTGGTCATG
GGACTTTCTTTCATGAAACCATCAGCAGGGAAATCAAGAACTGCAGTCAG
CGGATCATATTTTGTCCATCATCATATGCCTGATTACTGTGAACTGTTTA
TAATCTGCGGAGGGAAATTGGTGTCTCTGAAAGGAGAGAACGATGAGGGG
ATAATGGAGGACGATCAAGGAGTCAAATTTGCTAAAATGAGAGAAAGGGT
TAATTTTGGAAACTTGTGGACCAAAATGTTTTCTGGAAACGGAAGAAATC
CCAATCGCTTATCGATTTGTTCGAGGGGCCCGGACGCGGACTCCCCTTAT
TCACGGAGTACGTGGGAAAATTGTGTGCAGGAAATTGAAATTTATTTTCA
GCATTTGGCGTCTTTCAATCTGGACGACGCATCGAATTCTGAAGACGGGG
ATGAAATTTTGCAAACACGTGCAATAGAGCCAAACGCAGCGAAACCAATC
CATTCAAAAATGAATGTTTGCAAAAAAACTGAATTCTTGAAAA
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