DY304698

Overview
NameDY304698
Unique NameDY304698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length981
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304698 vs. ExPASy Swiss-Prot
Match: YJ2I_SCHPO (Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe GN=SPCC4B3.18 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.063e-17
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  414 PLNSEIESFFDSAPPLNDRAAISEKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 704
            P   +   FF+  P  N    +S  +++FI L   +S ++ +A VTSGGT VPLEQ  VR+IDNFS+G+RGAAS E+  K GY+VIFLYR  +  P+
Sbjct:    2 PEMDKSNDFFEENPCPNSLGDVSSLIEDFINL---QSNSQNIAFVTSGGTLVPLEQNTVRFIDNFSAGNRGAASAEYFCKSGYSVIFLYRNYSLMPF 95          
BLAST of DY304698 vs. ExPASy Swiss-Prot
Match: PPCS_MOUSE (Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.345e-15
Identity = 52/154 (33.77%), Postives = 75/154 (48.70%), Query Frame = 3
Query:  531 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTKES-----AVQVCQPYSEAVKKSIRDPHAALAGGLPVKLPFKLYSSIFRCFQ*MLYHLRNLGTWSMFLSWGRLFSKFHVP 977
            RRV  +TSGGT VPLE R VR++DNFSSG RGAAS E  +  GY V+FLYR  +  PY    P  A+L     +  +     +++  +        +++    A A G  + + F   +      Q     L  LG+ +MF       S F++P
Sbjct:   35 RRVVLITSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLAAGYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQEAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFY-LAAAVSDFYIP 187          
BLAST of DY304698 vs. ExPASy Swiss-Prot
Match: PPCS_HUMAN (Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 7.412e-15
Identity = 54/154 (35.06%), Postives = 72/154 (46.75%), Query Frame = 3
Query:  531 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTKESAVQVCQPYSE-----AVKKSIRDPHAALAGGLPVKLPFKLYSSIFRCFQ*MLYHLRNLGTWSMFLSWGRLFSKFHVP 977
            RRV  VTSGGT VPLE R VR++DNFSSG RGA S E  +  GY V+FLYR  +  PY    P   +L     +  +   +    +E        +++R    A A G  + + F   +      Q     L  LG  +MF       S F+VP
Sbjct:   35 RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFY-LAAAVSDFYVP 187          
BLAST of DY304698 vs. ExPASy Swiss-Prot
Match: YII3_YEAST (Uncharacterized protein YIL083C OS=Saccharomyces cerevisiae GN=YIL083C PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.384e-13
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  423 SEIESFFDSAPPLNDRAAISEKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 704
            +E E +F + P       + +  KEFI L  S     ++  +TSGGTTVPLE   VR+IDNFS+G RGA+S E  +  GY+VIFL+R  +  PY
Sbjct:   38 TEEEQYFKTNPKPAYIDELIKDAKEFIDLQYSLK-RNKIVLITSGGTTVPLENNTVRFIDNFSAGTRGASSAEQFLANGYSVIFLHREFSLTPY 130          
The following BLAST results are available for this feature:
BLAST of DY304698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YJ2I_SCHPO6.063e-1747.42Uncharacterized protein C4B3.18 OS=Schizosaccharom... [more]
PPCS_MOUSE4.345e-1533.77Phosphopantothenate--cysteine ligase OS=Mus muscul... [more]
PPCS_HUMAN7.412e-1535.06Phosphopantothenate--cysteine ligase OS=Homo sapie... [more]
YII3_YEAST2.384e-1344.68Uncharacterized protein YIL083C OS=Saccharomyces c... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ9YH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304698 ID=DY304698; Name=DY304698; organism=Citrus clementina; type=EST; length=981bp
CGAATAATACATAAAATGCGGCGTTAAACTAATTAAGTAGCCCCCGACCG
CCGCTGCAACTATCACCCACTTCGAAATCGACCTAATCCAAATCCCATAT
AAATATCGCCCTGCAGGTGAAACATGTCTTATTAGTCTCTTTCTCTGATC
GCTCCACTCCATTTCATCGCGTCCCCCCAGTCGCTATCACCCGCCGCCGC
CTCTATTCTCTGTATCGCGTCGCCGACAGAAGCGATCGATGACCGTTTGC
TTATAACACGTGTGCGGCTGTTATCGAAAAGGATAATCTTTATCTACAAG
TGACTATTTTGCCCTTGAACCATTTTTTAGATTTTTGAAAGTGGCGGGCT
ATTAATCAAAACCAAATTAACTGTAACCCCACAATCCGGGAAGGCAACCG
AGAAATGGATTCGCCGCTGAACTCAGAAATCGAATCATTTTTTGATTCGG
CTCCGCCTCTCAATGACCGCGCCGCTATCAGCGAGAAATTGAAGGAATTC
ATTGCACTGAATTCGTCAGAATCAGGAACAAGAAGAGTGGCGTGTGTGAC
ATCCGGCGGCACAACTGTGCCACTGGAGCAACGCTGTGTCCGTTATATTG
ATAATTTCAGCTCAGGCCACAGAGGAGCTGCTTCTACTGAGCATTTAATT
AAGATGGGATATGCTGTTATTTTCTTGTACCGAAGGGGAACTTGCGAGCC
ATATTGCAGTTCTCTCCCTGATGATGCGTTTCTTGAATGTTTTGAGGTCA
CTAAGGAGTCAGCAGTTCAAGTCTGCCAACCTTATTCCGAAGCAGTGAAG
AAAAGCATTAGGGATCCTCATGCTGCATTAGCAGGAGGCCTTCCTGTGAA
ACTTCCCTTTAAACTATATTCAAGTATCTTCCGATGCTTCCAATGAATGC
TGTACCATCTAAGGAATCTTGGAACATGGTCTATGTTTCTATCCTGGGGC
CGGCTGTTTTCGAAATTTCATGTCCCCAGGG
back to top