DY304702

Overview
NameDY304702
Unique NameDY304702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length946
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304702 vs. ExPASy Swiss-Prot
Match: NFXL1_XENLA (NF-X1-type zinc finger protein NFXL1 OS=Xenopus laevis GN=nfxl1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.997e-37
Identity = 74/200 (37.00%), Postives = 108/200 (54.00%), Query Frame = 2
Query:  308 IKPSDPTWHCSTLCYSIFHLICIQSWARQXXXXXXXXXXXXXPITAEKAAESS-TWNCPKCRSQYSKSQIPKKYLCFCGKLEDPYSEDPWILPHSCNEICNRPLQNNCGHFCLMLCHPGPCLPCPKLVYSTCFLRKFQEVP-PCGFQSFSCNKIVPNPLIVRLINVFNFARRGLALLENHGRGTCARCGKIEKKRGFFGK 901
            +K +   W CS  C+ IFH+ CIQ WA+              P+T +   +    W CPKCR +Y +S+ P +Y C+CGK+EDP   DPW++PHSC ++C R  +  CGH CL+LCHPGPC PCPK+V  TCF +K + VP  C  + +SC +     L+ +     N             +G C  C ++ K++   G+
Sbjct:  170 VKRNQAVWSCSG-CFCIFHMPCIQKWAKDSVFLVSS------PLTDDDFEKKDYPWPCPKCRYEYKRSETPCRYYCYCGKVEDP-PLDPWLVPHSCGQVCEREFKPTCGHKCLLLCHPGPCPPCPKMVTITCFCQKAKPVPRRCSAKEWSCQQPCRKTLMCKQHKCENPCH----------KGDCLPCPRVSKQKCLCGR 351          
BLAST of DY304702 vs. ExPASy Swiss-Prot
Match: NFXL1_HUMAN (NF-X1-type zinc finger protein NFXL1 OS=Homo sapiens GN=NFXL1 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 7.216e-36
Identity = 72/200 (36.00%), Postives = 106/200 (53.00%), Query Frame = 2
Query:  308 IKPSDPTWHCSTLCYSIFHLICIQSWARQXXXXXXXXXXXXXPITAEKAAESSTWNCPKCRSQYSKSQIPKKYLCFCGKLEDPYSEDPWILPHSCNEICNRPLQNNCGHFCLMLCHPGPCLPCPKLVYSTCFLRKFQEVP-PCGFQSFSCNKIVPNPLIVRLINVFNFARRGLALLENH-GRGTCARCGKIEKKRGFFGK 901
            +K +   W CS  C+ IFH+ CIQ WA+                  +   +   W CPKCR +Y +S+ P +Y C+CGK+EDP   DPW++PHSC ++C R  +  CGH CL+LCHPGPC PCPK+V +TC+ +K + +P  C  + +SC       L+            G    EN    G+C  C ++ +++   GK
Sbjct:  167 VKRNQAVWSCSG-CFCIFHMPCIQKWAKDSQFLVSSVTDD------DFGKKDCPWPCPKCRFEYKRSETPSRYYCYCGKVEDP-PLDPWLVPHSCGQVCEREFKPPCGHKCLLLCHPGPCPPCPKMVTTTCYCKKAKPIPRRCSAKEWSCQLPCGQKLLC-----------GQHKCENPCHAGSCQPCPRVSRQKCVCGK 347          
BLAST of DY304702 vs. ExPASy Swiss-Prot
Match: NFX1_BOVIN (Transcriptional repressor NF-X1 OS=Bos taurus GN=NFX1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.302e-24
Identity = 55/147 (37.41%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  302 ERIKPSDPTWHCSTLCYSIFHLICIQSWARQXXXXXXXXXXXXXPITAEKAAESSTWNCPKCRSQYSKSQIPKKYLCFCGKLEDP-YSEDPWILPHSCNEICNRPLQN-NCGHFCLMLCHPGPCLPCPKLVYSTCFLRKFQEVPPCG 736
            E ++ + P W C + CY +FHL CI+ WAR                 A +A   S W CP C  Q   + +P  Y CFCGK+++P +S +   +PHSC E+C R     +C H C +LCHPGPC PCP  +  TC   + +    CG
Sbjct:  360 ELVRVTAPVWSCQS-CYHVFHLNCIKKWARSP---------------ASQADGQSGWRCPAC--QNVSAHVPNTYTCFCGKVKNPEWSRNE--IPHSCGEVCRRKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECGRTRHTVRCG 486          

HSP 2 Score: 23.0978 bits (48), Expect = 1.302e-24
Identity = 9/32 (28.12%), Postives = 12/32 (37.50%), Query Frame = 1
Query:  763 CSKPFNCTTHKCFQFCQEGLGPP*KPRAGYMC 858
            C    NC  H C + C  G   P +     +C
Sbjct:  497 CDNILNCGQHHCAELCHGGPCQPCRVILNQVC 528          
BLAST of DY304702 vs. ExPASy Swiss-Prot
Match: NFX1_HUMAN (Transcriptional repressor NF-X1 OS=Homo sapiens GN=NFX1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.695e-24
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  302 ERIKPSDPTWHCSTLCYSIFHLICIQSWARQXXXXXXXXXXXXXPITAEKAAESSTWNCPKCRSQYSKSQIPKKYLCFCGKLEDP-YSEDPWILPHSCNEICNRPLQN-NCGHFCLMLCHPGPCLPCPKLVYSTCFLRKFQEVPPCG 736
            E ++ + P W C + CY +FHL CI+ WAR                 A +A   S W CP C  Q   + +P  Y CFCGK+++P +S +   +PHSC E+C +     +C H C +LCHPGPC PCP  +  TC   + +    CG
Sbjct:  363 ELVRVTAPVWSCQS-CYHVFHLNCIKKWARSP---------------ASQADGQSGWRCPAC--QNVSAHVPNTYTCFCGKVKNPEWSRNE--IPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECGRTRHTVRCG 489          

HSP 2 Score: 23.8682 bits (50), Expect = 1.695e-24
Identity = 8/23 (34.78%), Postives = 10/23 (43.48%), Query Frame = 1
Query:  763 CSKPFNCTTHKCFQFCQEGLGPP 831
            C    NC  H+C + C  G   P
Sbjct:  500 CENILNCGQHQCAELCHGGQCQP 522          
BLAST of DY304702 vs. ExPASy Swiss-Prot
Match: NFX1_MOUSE (Transcriptional repressor NF-X1 OS=Mus musculus GN=Nfx1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.195e-22
Identity = 53/147 (36.05%), Postives = 74/147 (50.34%), Query Frame = 2
Query:  302 ERIKPSDPTWHCSTLCYSIFHLICIQSWARQXXXXXXXXXXXXXPITAEKAAESSTWNCPKCRSQYSKSQIPKKYLCFCGKLEDP-YSEDPWILPHSCNEICNRPLQN-NCGHFCLMLCHPGPCLPCPKLVYSTCFLRKFQEVPPCG 736
            E ++ + P W C + C+ +FHL CI+ WAR                 A  A   S W CP C  Q   + +P  Y CFCGK+++P +S +   +PHSC E+C +     +C H C +LCHPGPC PCP     TC   + +    CG
Sbjct:  357 ELVQVTAPVWSCQS-CFHVFHLNCIKKWARSP---------------ASHADGQSGWRCPAC--QNVSAHVPNTYTCFCGKVKNPEWSRNE--IPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFTTKTCECGRTRHTVRCG 483          
BLAST of DY304702 vs. ExPASy Swiss-Prot
Match: FAP1H_SCHPO (FKBP12-associated protein 1 homolog OS=Schizosaccharomyces pombe GN=fap1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.468e-20
Identity = 49/137 (35.77%), Postives = 68/137 (49.64%), Query Frame = 2
Query:  302 ERIKPSDPTWHCSTLCYSIFHLICIQSWARQXXXXXXXXXXXXXPITAEKAAESSTWNCPKCRSQYSKSQIPKKYLCFCGKLEDPYSEDPWILPHSCNEICNRPLQNNCGHFCLMLCHPGPCLPCPKLVYSTCFLRK 712
            + I PS   W C T CY +FHL CI+ W +                + E+  E + W CP C+S  +++ +   YLC+CGK E P      ++PHSC + C +    +C H C +LCHPGPC PC   V   C   K
Sbjct:  202 DTINPSTSIWSCGT-CYHVFHLSCIRKWCKN---------------SIEQRNEDA-WRCPYCQSNQTETSL--HYLCWCGKQEKPEFVKN-LVPHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGK 318          
BLAST of DY304702 vs. ExPASy Swiss-Prot
Match: STC_DROME (Protein shuttle craft OS=Drosophila melanogaster GN=stc PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.386e-19
Identity = 50/147 (34.01%), Postives = 65/147 (44.22%), Query Frame = 2
Query:  302 ERIKPSDPTWHCSTLCYSIFHLICIQSWARQXXXXXXXXXXXXXPITAEKAAESSTWNCPKCRSQYSKSQIPKKYLCFCGKLEDPYSEDPWILPHSCNEICNRPLQNNCGHFCLMLCHPGPCLPCPKLVYSTCFLRKFQEVPPCGFQ 742
            E IK   PTW C   CY + HL C  +WA                     +     W CP C++      +P+ YLCFCGKL++P       L HSC E+C R     C H C +LCHPGPC PC   V  +C   +  +   C  +
Sbjct:  391 EAIKSHQPTWSCRN-CYHMLHLKCTITWA-------------------SSSKSEVGWRCPACQNVLQ--DLPRDYLCFCGKLKNP-PVSRTELAHSCGEVCCRI--EGCSHACTLLCHPGPCPPCQANVVRSCGCGRSTKTMQCAMK 512          

HSP 2 Score: 23.8682 bits (50), Expect = 1.386e-19
Identity = 8/19 (42.11%), Postives = 9/19 (47.37%), Query Frame = 1
Query:  763 CSKPFNCTTHKCFQFCQEG 819
            C K  NC  H+C   C  G
Sbjct:  521 CDKLLNCGEHRCQAECHSG 539          
BLAST of DY304702 vs. ExPASy Swiss-Prot
Match: NFX1_DICDI (Transcriptional repressor NF-X1 homolog OS=Dictyostelium discoideum GN=nfx1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.030e-19
Identity = 46/129 (35.66%), Postives = 65/129 (50.39%), Query Frame = 2
Query:  302 ERIKPSDPTWHCSTLCYSIFHLICIQSWARQXXXXXXXXXXXXXPITAEKAAESSTWNCPKCRSQYSKSQIPKKYLCFCGKLEDPYSEDPWILPHSCNEICNR-PLQNNCGHFCLMLCHPGPCLPCPKL 685
            E +  +   W CS  C+++FH  CI+ W+ +              +T E       W CP CR  +       +  CFCGK++DP   +P+ L HSC E+C +   ++NC H C MLCHPGPCL C  L
Sbjct:  371 ENVGKNAVIWSCSQ-CFTMFHSSCIKQWSSKS-------------VTTE-----GKWKCPGCRYNHEVKPEHFQPACFCGKVKDP-QYNPYHLAHSCGEVCGKLRAKSNCPHSCTMLCHPGPCLNCSSL 479          

HSP 2 Score: 25.0238 bits (53), Expect = 3.030e-19
Identity = 9/23 (39.13%), Postives = 11/23 (47.83%), Query Frame = 1
Query:  763 CSKPFNCTTHKCFQFCQEGLGPP 831
            C K  +C  H+C Q C  G   P
Sbjct:  509 CEKLLSCGNHRCQQQCHSGSCSP 531          
BLAST of DY304702 vs. ExPASy Swiss-Prot
Match: NFX1_CAEEL (Transcriptional repressor NF-X1 homolog OS=Caenorhabditis elegans GN=tag-182 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.046e-18
Identity = 59/202 (29.21%), Postives = 80/202 (39.60%), Query Frame = 2
Query:  305 RIKPSDPTWHCSTLCYSIFHLI--CIQSWARQXXXXXXXXXXXXXPITAEKAAESSTWNCPKCRSQYSKSQIPKKYLCFCGKLEDPYSEDPWILPHSCNEICNRPLQNNCGHFCLMLCHPGPCLPCPKLVYSTCFLRKFQEVPPCGF-QSFSCNKIVPNPLIVRLINVFNFARRGLALLENHGRGTCARCGKIEKKRGFFGK 901
            RI      W C T CY IFH+   CI  WAR                ++     ++TW CP C+++     +P  Y CFCG++ +P      + PHSC E C    +  C H C  LCHPGPC+ C      +C   K ++   CG  Q   C  +    L     N                 G C  C  I ++  F GK
Sbjct:  241 RITTRQGVWSCKT-CYHIFHISTGCITDWAR----------------SSRDKEGANTWRCPTCQTE--NETMPYNYYCFCGRMRNPNFRVGEV-PHSCGETCGGARKFGCPHPCTELCHPGPCIECKLFTTKSCNCGKTKKSVRCGSDQEVMCETVCGKQLSCGQHNCERICH----------SGDCGECTVILEQDCFCGK 412          
The following BLAST results are available for this feature:
BLAST of DY304702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NFXL1_XENLA4.997e-3737.00NF-X1-type zinc finger protein NFXL1 OS=Xenopus la... [more]
NFXL1_HUMAN7.216e-3636.00NF-X1-type zinc finger protein NFXL1 OS=Homo sapie... [more]
NFX1_BOVIN1.302e-2437.41Transcriptional repressor NF-X1 OS=Bos taurus GN=N... [more]
NFX1_HUMAN1.695e-2436.73Transcriptional repressor NF-X1 OS=Homo sapiens GN... [more]
NFX1_MOUSE1.195e-2236.05Transcriptional repressor NF-X1 OS=Mus musculus GN... [more]
FAP1H_SCHPO9.468e-2035.77FKBP12-associated protein 1 homolog OS=Schizosacch... [more]
STC_DROME1.386e-1934.01Protein shuttle craft OS=Drosophila melanogaster G... [more]
NFX1_DICDI3.030e-1935.66Transcriptional repressor NF-X1 homolog OS=Dictyos... [more]
NFX1_CAEEL3.046e-1829.21Transcriptional repressor NF-X1 homolog OS=Caenorh... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YH11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304702 ID=DY304702; Name=DY304702; organism=Citrus clementina; type=EST; length=946bp
AACAAATCCTAGGAATCCCAAGCTCATCAAACCCCGTAAAATCCTGCATC
ATTTTTTAATCAAAATTTCCAAAATGACCTCCTCCGCTAATTACCAACAA
ATATTATCGGACTCCGACACAGACTCCGACAACGGCCGCACCGAATCATT
CCCCGATCTCTCGAGCTCCATTCTCAAACCCTACCTAGAATCCACCAACC
AATCATCACTCGCCACGTCACAATCACCATCAGAACTCTCAAAAATCAAA
TCGTTCCTCGCCTCATCCTCCTCCGGCGCCCTATCATGCCTCATATGCCT
CGAACGCATCAAGCCCTCCGATCCGACGTGGCACTGCTCCACTCTTTGCT
ACTCTATCTTCCACTTAATCTGCATCCAGTCGTGGGCCCGCCAATCCTCC
GATCTATCCGCCTCCCTCGCCGCCTCCCGCCTCCCTATCACCGCCGAAAA
AGCTGCCGAATCCTCCACCTGGAACTGCCCTAAATGCCGATCTCAGTACT
CGAAATCTCAAATCCCTAAGAAATATCTTTGCTTTTGCGGCAAATTGGAG
GATCCGTACAGTGAAGATCCCTGGATTTTGCCGCATTCTTGTAACGAAAT
ATGCAACAGACCGTTGCAAAACAACTGCGGTCACTTTTGTTTAATGTTAT
GTCATCCAGGTCCCTGCCTCCCCTGCCCCAAGTTAGTTTACTCAACTTGC
TTCCTGCGCAAGTTTCAAGAAGTTCCTCCCTGCGGATTTCAATCGTTTTC
GTGTAACAAAATTGTTCCAAACCCTTTAATTGTACGACTCATAAATGTTT
TCAATTTTGCCAGGAGGGGCTTGGCCCTCCTTGAAAACCACGGGCGGGGT
ACATGTGCCCGGTGTGGGAAAATTGAAAAAAAAAGGGGGTTTTTTGGAAA
GGCATTTTTGGTGGGACACCGCCTTGGGCCGAAACGCCCATATTGG
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