DY304703

Overview
NameDY304703
Unique NameDY304703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304703 vs. ExPASy Swiss-Prot
Match: PLSB_ARATH (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ATS1 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.138e-49
Identity = 109/204 (53.43%), Postives = 143/204 (70.10%), Query Frame = 3
Query:  186 PCTSISSFKVRAKAKMVQDMESTVSSASASDEQNKKMLNIEVNHSRTFLDVRSEQDLLSGIGREVETRRLPSNLATGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFKSSNVGNVIPFL*KGRET*PGP**PY*SLTPKMKQNPASLLLMLETQNPNGGENL 797
            P  S     VRA +++VQD ES+V+++ A +E   +  + E++HSRTFLD RSEQDLLSGI +E E  RLP+N+A GMEELY NYKNAV  SG SRADE V+SNM+VAFDR+LL +E+P+TF+ YHK++REPFDYYMF   YIRPL+DFK+S VGN   F     +   G      S   + + +PA + L+LE Q+P  GEN+
Sbjct:   52 PLRSRGGVSVRAMSELVQDKESSVAASIAFNEAAGETPS-ELSHSRTFLDARSEQDLLSGIKKEAEAGRLPANVAAGMEELYWNYKNAVLSSGASRADETVVSNMSVAFDRMLLGVEDPYTFNPYHKAVREPFDYYMFVHTYIRPLIDFKNSYVGNASIFSELEDKIRQGHNIVLIS-NHQSEADPAVISLLLEAQSPFIGENI 253          
BLAST of DY304703 vs. ExPASy Swiss-Prot
Match: PLSB_CUCSA (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.822e-47
Identity = 102/196 (52.04%), Postives = 135/196 (68.88%), Query Frame = 3
Query:  216 RAKAKMVQDMESTVSSASASDEQNKKMLNIEVNHSRTFLDVRSEQDLLSGIGREVETRRLPSNLATGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFKSSNVGNVIPFL*KGRET*PGP**PY*SLTPKMKQNPASLLLMLETQNPNGGENLNY 803
            RA A+++QD ES  + ++    +N      +  HSR FLD+RSE++LLS I RE E  +LPSN+A GMEELY NYKNAVF+SGN +ADEIVLSNM VA DR+LLD+E+PF FS +HK++REPFDYY FGQNY+RPL+DF++S VGN+  F     +   G      S   + + +PA + L+LE  NP   EN+ Y
Sbjct:   78 RAMAELIQDKESAHTPSTTDVTRN------DPPHSRAFLDLRSEEELLSCIRRETEAGKLPSNVAAGMEELYQNYKNAVFESGNPKADEIVLSNMTVALDRILLDVEDPFMFSPHHKAIREPFDYYTFGQNYVRPLIDFENSFVGNLSLFKDIEEKLHQGHNVVLIS-NHQTEADPAIISLLLEKTNPYIAENMIY 266          
BLAST of DY304703 vs. ExPASy Swiss-Prot
Match: PLSB_CUCMO (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Cucurbita moschata PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.212e-46
Identity = 101/190 (53.16%), Postives = 132/190 (69.47%), Query Frame = 3
Query:  225 AKMVQDMESTVSSASASDEQNKKMLNIEVNHSRTFLDVRSEQDLLSGIGREVETRRLPSNLATGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFKSSNVGNVIPFL*KGRET*PGP**PY*SLTPKMKQNPASLLLMLETQNPNGGEN 794
            A+++QD ES  S+A+A+   +      E  HSR FLDVRSE++LLS I +E E  +LP N+A GMEELY NY+NAV +SGN +ADEIVLSNM VA DR+LLD+E+PF FSS+HK++REPFDYY+FGQNYIRPL+DF +S VGN+  F     +   G      S   + + +PA + L+LE  NP   EN
Sbjct:    2 AELIQDKESAQSAATAAAASSGYERRNEPAHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLIS-NHQTEADPAIISLLLEKTNPYIAEN 190          
BLAST of DY304703 vs. ExPASy Swiss-Prot
Match: PLSB_CARTI (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Carthamus tinctorius PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.342e-43
Identity = 96/182 (52.75%), Postives = 122/182 (67.03%), Query Frame = 3
Query:  258 SSASASDEQNKKMLNIEVNHSRTFLDVRSEQDLLSGIGREVETRRLPSNLATGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFKSSNVGNVIPFL*KGRET*PGP**PY*SLTPKMKQNPASLLLMLETQNPNGGENLNY 803
            S +S+S    +     +  HSRTF+D RSEQDLLSGI RE+E   LP ++A  MEELY NYKNAV QS    A++IVLSNM VAFDR+ LD++EPF FS YH+++ EPF+YYMFGQNYIRPLV+F+ S VGNV  F     +   G      S   + + +PA + LMLET NP+  EN+ Y
Sbjct:   75 SPSSSSSAATQPSAGSDHGHSRTFIDARSEQDLLSGIQRELEAGTLPKHIAQAMEELYQNYKNAVLQSAAPHAEDIVLSNMRVAFDRMFLDVKEPFEFSPYHEAILEPFNYYMFGQNYIRPLVNFRESYVGNVSVFGVMEEQLKQGDKVVLIS-NHQTEADPAVIALMLETTNPHISENIIY 255          
BLAST of DY304703 vs. ExPASy Swiss-Prot
Match: PLSB_PHAVU (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Phaseolus vulgaris GN=PLSB PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.774e-41
Identity = 107/268 (39.93%), Postives = 157/268 (58.58%), Query Frame = 3
Query:    3 LLMSSLSLTFIPT-TAPRVLVXXXXXXXXXXXXXXXXXATTARWHSTAVTVRSGARRTSAACPCTSISSFKVRAKAKMVQDMESTVSSASASDEQNKKMLNIEVNHSRTFLDVRSEQDLLSGIGREVETRRLPSNLATGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFKSSNVGNVIPFL*KGRET*PGP**PY*SLTPKMKQNPASLLLMLETQNPNGGENLNY 803
            LL+S+   TF PT T PRV +                 ++T+   S+++++RS    T+ +  C+S++              ++ ++SA  S       ++     SRTFL+ +SEQD+ +GI +EVE   LP+N+A GMEE+Y+NYK AV QSG+ +A+EIVLSNM    DRV LD+ +PF F  +HK+ REPFDYY+FGQNYIRPLVDFK++ VGN+  F+    +   G      S   + + +PA + L+LET+ P   ENL Y
Sbjct:   27 LLLSTPPTTFFPTSTTPRVTLL----------------SSTSSSSSSSISLRSS---TAPSPSCSSVTP------------KDNCLASAKHSPPNMSASVS-----SRTFLNAQSEQDVFAGIKKEVEAGSLPANVAAGMEEVYNNYKKAVIQSGDPKANEIVLSNMIALLDRVFLDVTDPFVFQPHHKAKREPFDYYVFGQNYIRPLVDFKNAYVGNMPLFIEMEEKLKQGHNIILMS-NHQTEADPAIISLLLETRLPYIAENLTY 257          
BLAST of DY304703 vs. ExPASy Swiss-Prot
Match: PLSB_PEA (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Pisum sativum GN=GPAT PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.536e-39
Identity = 85/162 (52.47%), Postives = 117/162 (72.22%), Query Frame = 3
Query:  318 SRTFLDVRSEQDLLSGIGREVETRRLPSNLATGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFKSSNVGNVIPFL*KGRET*PGP**PY*SLTPKMKQNPASLLLMLETQNPNGGENLNY 803
            SRTFL+ ++EQD+LSGI +EVE   LP+++A GMEE+Y NYK+AV +SG+ +A+EIVLSNM    DR+ LD++EPF F ++HK+ REPFDYYMFGQNYIRPLVDF++S VGN+  F+    +   G      S   + + +PA + L+LE + P+  ENL Y
Sbjct:   93 SRTFLNAQNEQDVLSGIKKEVEAGTLPASIAAGMEEVYLNYKSAVIKSGDPKANEIVLSNMTALLDRIFLDVKEPFVFEAHHKAKREPFDYYMFGQNYIRPLVDFETSYVGNMPLFIQMEEQLKQGHNIILMS-NHQSEADPAIIALLLEMRLPHIAENLIY 253          
BLAST of DY304703 vs. ExPASy Swiss-Prot
Match: PLSB_SPIOL (Glycerol-3-phosphate acyltransferase, chloroplastic OS=Spinacia oleracea GN=GAT PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.202e-37
Identity = 102/234 (43.59%), Postives = 136/234 (58.12%), Query Frame = 3
Query:  135 STAVTVRSGARRTSAACPCTSISSFKVRAKAKMVQDMESTVSSASAS------DEQN-----KKMLNIEVNHSRTFLDVRSEQDLLSGIGREVETRRLPSNLATGMEELYHNYKNAVFQSGNSRADEIVLSNMAVAFDRVLLDIEEPFTFSSYHKSMREPFDYYMFGQNYIRPLVDFKSSNVGNVIPFL*KGRET*PGP**PY*SLTPKMKQNPASLLLMLETQNPNGGENLNY 803
            S  V  RS   R +++  C   S  K+ A   +     ST +SAS S      +E+N     KK  + ++  SRT+ +VRS ++L+S I RE E  RLP ++A  ME L+H Y+NAV  SG S ADEIVLSNM+V  D VLLDIE+PF F  +HK++REP DYY FGQ+YIRPLVDF +S VGN+  F     +   G      S   + + +PA + L+LE  N    ENL Y
Sbjct:   35 SAVVFRRSFFTRFNSSLICCCSSKLKLMADTALPSSSSSTSASASYSAAAKSVEEENHEIPVKKEDDNQLLRSRTYRNVRSAEELISEIKRESEIGRLPKSVAYAMEGLFHYYRNAVLSSGISHADEIVLSNMSVMLDFVLLDIEDPFVFPPFHKAIREPADYYSFGQDYIRPLVDFGNSYVGNIAIFQEMEEKLKQGDNIILMS-NHQSEADPAVIALLLEKTNSLIAENLIY 267          
The following BLAST results are available for this feature:
BLAST of DY304703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PLSB_ARATH2.138e-4953.43Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_CUCSA5.822e-4752.04Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_CUCMO2.212e-4653.16Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_CARTI1.342e-4352.75Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_PHAVU4.774e-4139.93Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_PEA1.536e-3952.47Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
PLSB_SPIOL3.202e-3743.59Glycerol-3-phosphate acyltransferase, chloroplasti... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ9YH12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304703 ID=DY304703; Name=DY304703; organism=Citrus clementina; type=EST; length=847bp
GACTACTGATGTCTTCGCTGTCACTCACATTCATCCCCACGACAGCGCCT
AGGGTTTTGGTTCCGTCTTCGACGTCTAATCCGAAGCTCTCTCCTTCTTC
TTATTCTTTTTCAGCAACAACCGCACGTTGGCATTCAACTGCGGTGACGG
TTCGATCCGGAGCACGGAGGACTTCCGCCGCGTGTCCTTGCACGTCCATC
AGCTCCTTCAAGGTTCGAGCAAAGGCTAAGATGGTTCAAGACATGGAGTC
CACCGTGTCGTCGGCATCCGCGAGTGACGAGCAGAACAAGAAAATGCTCA
ATATAGAGGTTAATCACTCCCGTACGTTTCTCGACGTTCGTTCTGAACAA
GATCTTCTGTCTGGAATTGGCAGGGAAGTTGAAACAAGAAGGCTGCCATC
AAATCTTGCCACTGGGATGGAAGAGTTGTATCACAATTATAAAAATGCAG
TCTTTCAAAGTGGAAATTCTAGGGCTGATGAGATTGTATTGTCAAATATG
GCTGTTGCATTTGATCGAGTATTGTTGGACATTGAAGAACCTTTTACGTT
CTCATCTTATCACAAGTCAATGAGAGAGCCTTTTGACTATTACATGTTTG
GTCAAAATTATATACGACCTTTGGTTGATTTCAAAAGTTCAAACGTTGGC
AATGTAATCCCTTTTCTTTGAAAAGGAAGAGAAACTTAACCAGGGCCATA
ATAACCGTATTGATCCCTAACCCCCAAAATGAAACAAAACCCTGCATCCT
TGCTTTTAATGCTTGAAACACAAAACCCCAATGGTGGTGAAAACCTTAAC
TACAATAGCAGGGGAAAAAATTAAAACCGATCCTCCCGGCCAACCCT
back to top