DY304712

Overview
NameDY304712
Unique NameDY304712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304712 vs. ExPASy Swiss-Prot
Match: ACBP1_ARATH (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 4.800e-53
Identity = 113/216 (52.31%), Postives = 139/216 (64.35%), Query Frame = 1
Query:  124 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDEMFXXXXXXXXXXXXXXX-QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMPKYIDIVTELYPTWAAGSSLSKREQKDAA 768
            M+DW  L QSI+ GL+F+YL+AKLIS++L+FK+ENLS+TR N+   +E +           N R  E  +G   +T+S+IAEQGS+R +E                   STELDE F                QKVSN++QLQLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM KYID+VT+LYP W  G S  +    +AA
Sbjct:    1 MADWYQLAQSIIFGLIFAYLLAKLISILLAFKDENLSLTR-NHTTQSEYE-----------NLRKVETLTGISGETDSLIAEQGSLRGDED-------ESDDDDWEGVESTELDEAFSAATAFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAWVEGGSKRRNRSGEAA 197          

HSP 2 Score: 29.261 bits (64), Expect = 4.800e-53
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  822 EEESGNDLKMDAIHGF 869
            EEES N+LK+DAIH F
Sbjct:  210 EEESDNELKIDAIHAF 225          
BLAST of DY304712 vs. ExPASy Swiss-Prot
Match: ACBP2_ARATH (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.962e-51
Identity = 113/232 (48.71%), Postives = 141/232 (60.78%), Query Frame = 1
Query:  124 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDEMFXXXXXXXXXXXXXXX-QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMPKYIDIVTELYPTWAAGSSLSKREQKDAASTESKTTNGSGFQLLL 816
            M DW  L QS+++GL+FSYL+AKLIS+V++FKE+NLS+TR    +  E K    D      + R   +  G   + +S++AEQGS R++                    STELDE F                QKV +DVQ QLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAMPPEEAM KYI+IVT+LYPTW  G   +     D A++ S+ T G  F  L+
Sbjct:    1 MGDWAQLAQSVILGLIFSYLLAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVD------SRRLDSSCGGFGGEADSLVAEQGSSRSDS---VAGDDSEEDDDWEGVESTELDEAFSAATLFVTTAAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGDDAASNSRGTMGPVFSSLV 223          

HSP 2 Score: 30.0314 bits (66), Expect = 1.962e-51
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  822 EEESGNDLKMDAIHGF 869
            +EES N+LK+DAIHGF
Sbjct:  225 DEESENELKIDAIHGF 240          
BLAST of DY304712 vs. ExPASy Swiss-Prot
Match: PECI_HUMAN (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo sapiens GN=PECI PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  532 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMPKYIDIVTELYPTWAAGSSLSKREQKDAASTES 780
            N+V+L+LYALYK ATEGPC+ P+P    +  +AKW AW  LG++P E A   Y+D+V+ L P+  + S +     + +   E+
Sbjct:   59 NEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFET 141          
BLAST of DY304712 vs. ExPASy Swiss-Prot
Match: PECI_MOUSE (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus musculus GN=Peci PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.891e-14
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  532 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMPKYIDIVTELYPTWAA------GSSLSKREQKDAAST 774
            N+V+L+LYALYK ATEGPC+ P+P  L    +AKW AW  LG++P E A   Y+D+V+ L  +  A      G+    RE KD   T
Sbjct:   57 NEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEAPSQGKRGADEKARESKDILVT 143          
BLAST of DY304712 vs. ExPASy Swiss-Prot
Match: PECI_RAT (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattus norvegicus GN=Peci PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.005e-13
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  532 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMPKYIDIVTELYPTWAAGSSLSKREQKDAASTESKTTNG 795
            N+V+L+LYALYK ATEGPC+ P+P       +AKW AW  LG++P E A   Y+D+V+ L     + SS +  + K  A  +++ + G
Sbjct:   57 NEVKLRLYALYKQATEGPCTMPKPGVFDFVNKAKWDAWNALGSLPKETARQNYVDLVSSL-----SSSSEASSQGKGGADGKAQESKG 139          
BLAST of DY304712 vs. ExPASy Swiss-Prot
Match: ACBP3_ARATH (Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.300e-12
Identity = 34/84 (40.48%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  520 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMPKYIDIVTELYP-TWAAGSSLSKREQKDAA 768
            +++  + +++L+ L+KIATEG C   QP A+ ++ARAKW AWQKLG M  EEAM +Y+ +V++  P    AG ++ K  + + +
Sbjct:  249 EEIGAEAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSKEIPGLTKAGHTVGKMSEMETS 332          
BLAST of DY304712 vs. ExPASy Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.781e-12
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1
Query:  523 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMPKYIDIVTELYPTWAAGSSLSKRE-----QKDAASTESKTTNGSGF 804
            K SND  L LY L++ AT GPCS P+PSA     ++KW++WQ LG MP  EAM  ++ I+ E  P W   +S S  +     Q ++   E    +G+ F
Sbjct:   39 KFSNDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQSKWKSWQGLGTMPSIEAMRLFVKILEEADPGWYPRTSNSVLDPAVHVQINSTKAEPSFESGASF 137          
BLAST of DY304712 vs. ExPASy Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.781e-12
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  523 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMPKYIDIVTELYPTWAAGSSLSKRE-----QKDAASTESKTTNGSGF 804
            K  +D  L LYALY+ AT GPC+ P+PSA +   ++KW++WQ LG MP  EAM  ++ I+ E  P W + +S    +     Q + A  E    NGS F
Sbjct:   38 KFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMRLFVKILEEDDPGWYSRASNDIPDPVVDVQINRAKDEPVVENGSTF 136          
BLAST of DY304712 vs. ExPASy Swiss-Prot
Match: ACB5A_DANRE (Acyl-CoA-binding domain-containing protein 5A OS=Danio rerio GN=acbd5a PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:  529 SNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMPKYID 696
            S+D+ L+ Y+ YK AT+GPC+ P+P       +AKW AW  LG MP EEAM  Y+D
Sbjct:   32 SHDMMLKFYSYYKQATQGPCNIPRPGFWDPVGKAKWDAWSSLGEMPKEEAMAAYVD 87          
The following BLAST results are available for this feature:
BLAST of DY304712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ACBP1_ARATH4.800e-5352.31Acyl-CoA-binding domain-containing protein 1 OS=Ar... [more]
ACBP2_ARATH1.962e-5148.71Acyl-CoA-binding domain-containing protein 2 OS=Ar... [more]
PECI_HUMAN3.093e-1440.96Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Homo ... [more]
PECI_MOUSE6.891e-1444.83Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus m... [more]
PECI_RAT2.005e-1340.91Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Rattu... [more]
ACBP3_ARATH1.300e-1240.48Acyl-CoA-binding domain-containing protein 3 OS=Ar... [more]
ACBP5_ARATH3.781e-1239.39Acyl-CoA-binding domain-containing protein 5 OS=Ar... [more]
ACBP4_ARATH3.781e-1240.40Acyl-CoA-binding domain-containing protein 4 OS=Ar... [more]
ACB5A_DANRE9.313e-1150.00Acyl-CoA-binding domain-containing protein 5A OS=D... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YH22RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304712 ID=DY304712; Name=DY304712; organism=Citrus clementina; type=EST; length=873bp
CGATCTCACTAATCAACCTCGGAAGCATCAATTTGCACCCAAGTTCAAAG
GTTTTAGCCTTGTCTTCCATCCAAAATTTGTCTCATTTTCTAGGGTTAGG
GTTTTCTTTCAGTTACAAAAGCCATGAGTGATTGGCAGCCTCTTCTGCAA
TCAATACTCATAGGCTTACTCTTCTCTTATCTTGTGGCTAAGTTAATCTC
TGTGGTCCTTTCTTTCAAAGAAGAGAATCTCTCTATCACTCGCAGTAACA
ATAACAACTACAATGAACCAAAGCGGACTAAAGACGACGTCGTCGTCGCC
GCCCCGAATCCGCGCGGGCCGGAGGCGGATTCGGGTCGGCCTCACGATAC
GGAGTCGATGATCGCGGAGCAAGGAAGCGTGAGGAACGAAGAGAGCTTGC
CTTGCAGTGATGTTGACAGCGATGGTGACGATGATTGGGAGGGTGTCGAG
TCTACGGAACTGGATGAGATGTTCAGTGCGGCCACCGCATTTGTGGCGGC
CAGTGCTGCTGCCTCGTCGCAGAAGGTGTCCAATGATGTGCAGTTGCAGC
TCTATGCGTTGTACAAGATTGCCACTGAAGGTCCCTGTAGTGCTCCCCAG
CCTTCTGCGTTGAAAATGACCGCTCGGGCCAAGTGGCAAGCATGGCAGAA
ATTGGGTGCCATGCCTCCAGAAGAAGCAATGCCAAAATACATTGATATTG
TTACAGAGCTGTATCCTACTTGGGCTGCTGGTTCATCTTTGAGCAAACGT
GAACAAAAAGATGCCGCAAGCACAGAATCCAAAACCACAAATGGGTCCGG
TTTTCAGCTCCTTTTGCGAATGAAGAGGAATCTGGAAATGATTTGAAAAT
GGATGCTATCCATGGCTTTTGCA
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