DY304716

Overview
NameDY304716
Unique NameDY304716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304716 vs. ExPASy Swiss-Prot
Match: LEUD_THEYD (3-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=leuD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.541e-11
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 2 
Query:    2 VALGAAGCSAVVAESYARIFFRNSVATGEIYPLDSEARLCEECSTGDVVTIEIAESRLINHTTGKEYKLKPIGD-LGPVIDAGGIFAYTRK 271
            +A+ A+G  AV+A+SYARIFFRN+   G   P+     L +E + GD V I++   ++IN T GK+Y  KPI   +  +I AGG+  +T+K
Sbjct:   72 IAIKASGIRAVIAKSYARIFFRNAFNIG--LPIFEVPELIDETNEGDEVEIDMNSGQIINLTKGKKYNTKPIPPFMQELIKAGGLVEWTKK 160
The following BLAST results are available for this feature:
BLAST of DY304716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LEUD_THEYD2.541e-1141.763-isopropylmalate dehydratase small subunit OS=The... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YI02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304716 ID=DY304716; Name=DY304716; organism=Citrus clementina; type=EST; length=462bp
GGTGGCGCTGGGAGCGGCAGGCTGTTCGGCGGTGGTTGCAGAGAGTTACG
CGAGGATATTCTTTAGGAATTCAGTTGCGACGGGGGAAATATATCCGTTG
GATTCGGAGGCAAGGCTTTGTGAGGAGTGCAGTACGGGAGATGTGGTAAC
TATTGAAATTGCTGAGAGCCGTTTGATCAATCACACTACTGGGAAGGAGT
ATAAATTGAAGCCCATTGGTGATTTGGGGCCCGTTATTGATGCTGGTGGT
ATCTTCGCCTACACGCGAAAGATCGGAATGATTGCCCGCCCCCACTGAAA
TATCTCATAACTTCTTTTGCAGGGTGTGCCTGCCGCATCATATGCAGTTT
CACAACCACTATTGGAACTTTAAAATAAAAACTCCTGCTTTTTCAAATGC
TCCGCCCTTGAAGAACTAAGTCCGGTTGCCCTTGTAATCAAAAAAATAAG
GTTTCCCCCGCT
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