DY304722

Overview
NameDY304722
Unique NameDY304722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1004
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 1.787e-115
Identity = 199/242 (82.23%), Postives = 220/242 (90.91%), Query Frame = 3
Query:   60 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782
            +GTR+ P I+  SGR  A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A  QLAEIKHAR AMVAFLGF
Sbjct:   15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGF 256          

HSP 2 Score: 25.0238 bits (53), Expect = 1.787e-115
Identity = 12/26 (46.15%), Postives = 14/26 (53.85%), Query Frame = 1
Query:  757 LPWLHFLASLVHPVSPEKGLLNNWAT 834
            L  + FL   V   +  KG LNNWAT
Sbjct:  248 LAMVAFLGFAVQAAATGKGPLNNWAT 273          
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 8.903e-112
Identity = 197/242 (81.40%), Postives = 217/242 (89.67%), Query Frame = 3
Query:   60 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782
            +GTR+  DI SNS R  ARFGFG +K +PKK+K  +  SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA  QLAEIKHAR AMV FLGF
Sbjct:   14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGF 253          

HSP 2 Score: 25.0238 bits (53), Expect = 8.903e-112
Identity = 12/26 (46.15%), Postives = 14/26 (53.85%), Query Frame = 1
Query:  757 LPWLHFLASLVHPVSPEKGLLNNWAT 834
            L  + FL   V   +  KG LNNWAT
Sbjct:  245 LAMVGFLGFAVQAAATGKGPLNNWAT 270          
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 9.797e-103
Identity = 185/244 (75.82%), Postives = 207/244 (84.84%), Query Frame = 3
Query:   63 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782
            G R+ D    +GR+QARFGF  GK+K AP  KKS+Q     DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK  T +LAEIKH+R AMVAFL F
Sbjct:   14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIF 256          
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 2.285e-59
Identity = 126/226 (55.75%), Postives = 150/226 (66.37%), Query Frame = 3
Query:  129 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TPQLAEIKHARPAMVAFLGF 782
            +K A     +S G   R      LW P    PEWLDGSL GD GFDP GL KP+E++    D  DQN AKN  G +        D  S+   L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWIEV+++G  EF RNSE +PEKR YPGG  FDPL LA++ E++A   + AEIKHAR AMV+F G+
Sbjct:   29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGY 252          
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.265e-25
Identity = 86/265 (32.45%), Postives = 117/265 (44.15%), Query Frame = 3
Query:  102 IQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATPQLAEIKHARPAMVAFLGF 782
            + ++ G G   T+ K    ++ ++ +  W P  K       PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D +K    +LAEIKHAR AM+A L F
Sbjct:   32 VNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245          
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.159e-25
Identity = 75/202 (37.13%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  186 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782
            W PG   P +LDGS  GD+GFD  GLG+                   PA                          L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DP K    ++ EIK+ R A++A +GF
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEV------------------PAN-------------------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGF 206          
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.809e-25
Identity = 76/202 (37.62%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  186 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782
            W+PG   P  LDGS  GD+GFDP GL    E                                             +RF+E E+ H RWAML   G L  E L    W  A +   L +G ++YLG P+P+ ++ T++ IE L I + E QR  E DPEK+ YPGG  FDPLG + DP K    +L EIK+ R AM+AF+GF
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGF 205          
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.639e-23
Identity = 84/246 (34.15%), Postives = 116/246 (47.15%), Query Frame = 3
Query:  120 FGKRKTAPKKSKQSSGSSDR-PLWY-------------PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782
            F K+K AP KSK  S +SD    WY               ++ PE+L+G + GDYG+DPFGLGK  E           N AK                                ++  ELIH RWAML   G +  E L            W   G + L++G++  Y G+ +P ++   +  EV+++G  E+ R  + LD E +L+PGG F DPLGLA DPE+ A  ++ EIK+ R AM A LGF
Sbjct:   39 FSKKKPAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGF 239          
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.003e-22
Identity = 79/237 (33.33%), Postives = 103/237 (43.46%), Query Frame = 3
Query:  186 WYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATPQLAEIKHARPAMVAFLGF 782
            W P  +       PEWLDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+  +++++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D EK    ++AEIKHAR AM+A L F
Sbjct:   55 WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240          
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.310e-22
Identity = 85/262 (32.44%), Postives = 110/262 (41.98%), Query Frame = 3
Query:  111 RFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------NSELD---------------PEKRLYPGGKFFDPLGLAA---------DPEKKATPQLAEIKHARPAMVAFLGF 782
            RF       APKKS           W P  K+      PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG           G   PFS  +L+  ++L++G++E +R        +  +D                 ++ YPGGKFFDPL LA          D EK    +LAEIKH+R AM+A L F
Sbjct:   41 RFVVAAAAVAPKKS-----------WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 240          
The following BLAST results are available for this feature:
BLAST of DY304722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB4A_ARATH1.787e-11582.23Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH8.903e-11281.40Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH9.797e-10375.82Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE2.285e-5955.75Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB4_SPIOL1.265e-2532.45Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB11_SOLLC2.159e-2537.13Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU4.809e-2537.62Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB26_ARATH2.639e-2334.15Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB4A_SOLLC1.003e-2233.33Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.310e-2232.44Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YI09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304722 ID=DY304722; Name=DY304722; organism=Citrus clementina; type=EST; length=1004bp
TAAGTTAGCCACAAGCCATGGCCTCAACCACAGCAGCAGCAGCCGCCACA
TCATCTTTCATTGGCACCCGCCTCCCCGACATTTACTCAAACTCGGGCCG
TATCCAAGCCCGGTTCGGCTTCGGAAAGAGAAAAACAGCACCCAAAAAGT
CGAAACAGTCTTCCGGATCCTCTGATCGTCCACTTTGGTACCCAGGAGCC
AAGGCACCCGAGTGGCTCGACGGGAGCTTGGTGGGTGACTACGGGTTCGA
CCCGTTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAGTATGACTATGACT
CGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGATATTATTGGGACG
AGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGA
AGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTT
GGGCCATGTTGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGG
ATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGATCATCATA
CCTGGGGCAACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGG
TTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCG
GAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGC
CGCTGACCCGGAAAAGAAAGCCACCCCTCAATTGGCAGAGATCAAGCACG
CCCGCCCTGCCATGGTTGCATTTCTTGGCTTCCCTGGTCCACCCTGTGTC
CCCGGAAAAAGGCCTCCTTAACAACTGGGCTACCCCCTTTGAACGATCCT
CTTCCACAAAACCATTTTTTGAACCCTTTCACTCTTAAAATTTCCGGGTG
TAACCCTCCAGTACTTTGGCCATTTGGCCCAAATTGTAATTAATTATATT
AAAAGGCGGCCTAAATTTTGAAAAATGAATTTATATACTTTTGAAAAACC
TATA
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