DY304722
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 413.305 bits (1061), Expect = 1.787e-115 Identity = 199/242 (82.23%), Postives = 220/242 (90.91%), Query Frame = 3 Query: 60 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782 +GTR+ P I+ SGR A FGFGK+K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A QLAEIKHAR AMVAFLGF Sbjct: 15 MGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGF 256 HSP 2 Score: 25.0238 bits (53), Expect = 1.787e-115 Identity = 12/26 (46.15%), Postives = 14/26 (53.85%), Query Frame = 1 Query: 757 LPWLHFLASLVHPVSPEKGLLNNWAT 834 L + FL V + KG LNNWAT Sbjct: 248 LAMVAFLGFAVQAAATGKGPLNNWAT 273
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 400.979 bits (1029), Expect = 8.903e-112 Identity = 197/242 (81.40%), Postives = 217/242 (89.67%), Query Frame = 3 Query: 60 IGTRL-PDIYSNSGRIQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782 +GTR+ DI SNS R ARFGFG +K +PKK+K + SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA QLAEIKHAR AMV FLGF Sbjct: 14 MGTRVVSDISSNSSRFTARFGFGTKKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGF 253 HSP 2 Score: 25.0238 bits (53), Expect = 8.903e-112 Identity = 12/26 (46.15%), Postives = 14/26 (53.85%), Query Frame = 1 Query: 757 LPWLHFLASLVHPVSPEKGLLNNWAT 834 L + FL V + KG LNNWAT Sbjct: 245 LAMVGFLGFAVQAAATGKGPLNNWAT 270
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 373.629 bits (958), Expect = 9.797e-103 Identity = 185/244 (75.82%), Postives = 207/244 (84.84%), Query Frame = 3 Query: 63 GTRLPDIYSNSGRIQARFGF--GKRKTAP--KKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782 G R+ D +GR+QARFGF GK+K AP KKS+Q DR +W+PGA PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK T +LAEIKH+R AMVAFL F Sbjct: 14 GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIF 256
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 229.565 bits (584), Expect = 2.285e-59 Identity = 126/226 (55.75%), Postives = 150/226 (66.37%), Query Frame = 3 Query: 129 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TPQLAEIKHARPAMVAFLGF 782 +K A +S G R LW P PEWLDGSL GD GFDP GL KP+E++ D DQN AKN G + D S+ L PY+EVFGL RFRECELIHGRWAMLA LGAL E TG++W +AGKVEL +G+SY G LPFSIT LIWIEV+++G EF RNSE +PEKR YPGG FDPL LA++ E++A + AEIKHAR AMV+F G+ Sbjct: 29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGY 252
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.265e-25 Identity = 86/265 (32.45%), Postives = 117/265 (44.15%), Query Frame = 3 Query: 102 IQARFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATPQLAEIKHARPAMVAFLGF 782 + ++ G G T+ K ++ ++ + W P K PEWLDGSL GD+GFDP GLGK +L++ +RE ELIHGRWAMLA LG + TGI W +AG + G PFS TL+ ++L++G++E +R + DP+ + YPGGKFFDPL LA D +K +LAEIKHAR AM+A L F Sbjct: 32 VNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.159e-25 Identity = 75/202 (37.13%), Postives = 103/202 (50.99%), Query Frame = 3 Query: 186 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782 W PG P +LDGS GD+GFD GLG+ PA L+R++E ELIH RWAMLA G + E L W A + + G ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG FDPLG + DP K ++ EIK+ R A++A +GF Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEV------------------PAN-------------------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGF 206
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.809e-25 Identity = 76/202 (37.62%), Postives = 98/202 (48.51%), Query Frame = 3 Query: 186 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782 W+PG P LDGS GD+GFDP GL E +RF+E E+ H RWAML G L E L W A + L +G ++YLG P+P+ ++ T++ IE L I + E QR E DPEK+ YPGG FDPLG + DP K +L EIK+ R AM+AF+GF Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGF 205
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.639e-23 Identity = 84/246 (34.15%), Postives = 116/246 (47.15%), Query Frame = 3 Query: 120 FGKRKTAPKKSKQSSGSSDR-PLWY-------------PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATPQLAEIKHARPAMVAFLGF 782 F K+K AP KSK S +SD WY ++ PE+L+G + GDYG+DPFGLGK E N AK ++ ELIH RWAML G + E L W G + L++G++ Y G+ +P ++ + EV+++G E+ R + LD E +L+PGG F DPLGLA DPE+ A ++ EIK+ R AM A LGF Sbjct: 39 FSKKKPAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGF 239
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.003e-22 Identity = 79/237 (33.33%), Postives = 103/237 (43.46%), Query Frame = 3 Query: 186 WYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATPQLAEIKHARPAMVAFLGF 782 W P + PEWLDGSL GDYGFDP GLGK +L++ +RE ELIHGRWAM A LG + +GI W +AG + G PFS TL+ +++++G++E +R + DP+ + YPGGKFFDPL LA D EK ++AEIKHAR AM+A L F Sbjct: 55 WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240
BLAST of DY304722 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.310e-22 Identity = 85/262 (32.44%), Postives = 110/262 (41.98%), Query Frame = 3 Query: 111 RFGFGKRKTAPKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------NSELD---------------PEKRLYPGGKFFDPLGLAA---------DPEKKATPQLAEIKHARPAMVAFLGF 782 RF APKKS W P K+ PEWLDGSL GD+GFDP GLGK +L++ +RE ELIHGRWAM A LG + +GI W +AG G PFS +L+ ++L++G++E +R + +D ++ YPGGKFFDPL LA D EK +LAEIKH+R AM+A L F Sbjct: 41 RFVVAAAAVAPKKS-----------WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 240 The following BLAST results are available for this feature:
BLAST of DY304722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >DY304722 ID=DY304722; Name=DY304722; organism=Citrus clementina; type=EST; length=1004bpback to top |