DY304729

Overview
NameDY304729
Unique NameDY304729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length939
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304729 vs. ExPASy Swiss-Prot
Match: NU160_MOUSE (Nuclear pore complex protein Nup160 OS=Mus musculus GN=Nup160 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.472e-12
Identity = 58/190 (30.53%), Postives = 84/190 (44.21%), Query Frame = 1
Query:   43 NPYELLYAFEMQRHNWRKAASYMYLYSARLRTEPVPKDSQHMLSALQERLNGLSAAINALHLVHPAYAWI-DPFSGKNSIQNEHYPRKKAKKTVIEQLVGSDIQPQCLQSYIDIDKLEKEYVLTSAEYLLSTRNVKWTFNGINEVPSDLVDLLVQTNFYDMAFTVLLKFWKGSRLKRELEIVFFAMSLKC 609
            N YELLYAF + RHN+RKA + M+ Y  RL  E         L  L+++ N   AAIN L L+ P YAWI  P SG  S +    P++              I+       ++++ LEKEY L      L+  +        +    ++  LLVQ   +D A ++   F         L  VF  ++ KC
Sbjct: 1045 NYYELLYAFHIYRHNYRKAGTVMFEYGMRLGRE------VRTLRGLEKQGNCYLAAINCLRLIRPEYAWIVQPASGAVSDRPGASPKRNHDGECTAAPTNRQIE------ILELEDLEKEYSLARIRLTLARHDPSVIAIAGSSSAKEMSALLVQAGLFDTAISLCQTF------TLPLTPVFEGLAFKC 1216          
BLAST of DY304729 vs. ExPASy Swiss-Prot
Match: NU160_HUMAN (Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.217e-12
Identity = 57/190 (30.00%), Postives = 84/190 (44.21%), Query Frame = 1
Query:   43 NPYELLYAFEMQRHNWRKAASYMYLYSARLRTEPVPKDSQHMLSALQERLNGLSAAINALHLVHPAYAWI-DPFSGKNSIQNEHYPRKKAKKTVIEQLVGSDIQPQCLQSYIDIDKLEKEYVLTSAEYLLSTRNVKWTFNGINEVPSDLVDLLVQTNFYDMAFTVLLKFWKGSRLKRELEIVFFAMSLKC 609
            N YELLYAF + RHN+RKA + M+ Y  RL  E         L  L+++ N   AA+N L L+ P YAWI  P SG    +    P++              I+       ++++ LEKE  L      L+  +        +    ++V LLVQ   +D A ++   F      K  L  VF  ++ KC
Sbjct: 1079 NYYELLYAFHIYRHNYRKAGTVMFEYGMRLGRE------VRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPVSGAVYDRPGASPKRNHDGECTAAPTNRQIE------ILELEDLEKECSLARIRLTLAQHDPSAVAVAGSSSAEEMVTLLVQAGLFDTAISLCQTF------KLPLTPVFEGLAFKC 1250          
The following BLAST results are available for this feature:
BLAST of DY304729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NU160_MOUSE2.472e-1230.53Nuclear pore complex protein Nup160 OS=Mus musculu... [more]
NU160_HUMAN4.217e-1230.00Nuclear pore complex protein Nup160 OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YI17RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304729 ID=DY304729; Name=DY304729; organism=Citrus clementina; type=EST; length=939bp
CTTGGTTGGAAGGCAGACCGTTCAGATATCTTAGCCAAGCCAAACCCATA
TGAGTTGCTTTATGCATTTGAAATGCAACGACATAATTGGCGAAAGGCAG
CAAGTTACATGTATCTATATTCAGCTCGTTTGAGAACTGAACCAGTTCCA
AAGGATAGCCAGCATATGTTATCTGCACTACAAGAAAGGCTGAATGGACT
TTCTGCAGCTATTAATGCATTGCATCTTGTTCATCCAGCATATGCTTGGA
TAGATCCTTTCTCTGGGAAAAATTCTATTCAAAATGAGCATTATCCAAGA
AAAAAGGCTAAAAAAACCGTGATAGAACAATTGGTCGGCAGTGATATTCA
GCCCCAGTGTCTGCAATCATACATCGATATAGATAAACTGGAGAAAGAAT
ATGTGCTCACTTCAGCTGAATATTTACTATCAACGAGAAATGTGAAGTGG
ACGTTTAATGGAATTAACGAAGTCCCATCAGATTTGGTTGATCTCCTGGT
CCAGACAAATTTTTACGATATGGCATTCACAGTTCTTTTGAAATTTTGGA
AGGGCTCGAGATTAAAGAGGGAACTGGAGATAGTTTTCTTTGCCATGTCA
TTAAAATGCTGTCCAAACAAAGTAGACTCAGCATGTCTCGGAACACATGG
TCTTTTGCTAACATCTTCAAAAGATGAAGTGGTTGTTCATGGTTCTCCAG
ACAACATTGCTGCTGCTCACCAATATAAGGGGAATGGTCAATGGGAAACT
CTTGAGCTTTACCTTATAAAGTATAAGGACTTTCATGCTGGTTTGCCAAT
AGTTGTTGCTGAGACCCTTCTTCGTACAAAATCCGCGCATTGAATTGGCT
CTATTGGTTGATCTGTAAGTTTCAAGGGTGAATCGAAAAGAAAAAAAATG
GGGGTATAACCAACCCCGGGAATCAAGTCCTGGCATCCT
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