DY304735

Overview
NameDY304735
Unique NameDY304735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304735 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.882e-26
Identity = 58/152 (38.16%), Postives = 87/152 (57.24%), Query Frame = 3 
Query:  276 ELWSPLVNQGWRPCAESTA----LPKKSRGYVQVFLDGGLNQQRMGICDAVAVAKILNATLVLPHLEVNPVWRDSSSFADIFDVDHFISSLRDEISIVKELPSEY-SWSSREYYATGIRDTRIKTAPVHASANWYLENVLPILQSTHGVKST 716
            ELW    + GWRP +   +      K++ GY++V  +GGLNQQR  IC+AV  A+I+NATLVLP L+ N  W D S F  I+DV+HFI +L+ ++ IV ++P  + +  +++  A  IR  R   AP+     WYL   L  ++    +  T
Sbjct:   61 ELWESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQIRPPR--DAPI----EWYLTTALKAMREHSAIYLT 206

HSP 2 Score: 34.6538 bits (78), Expect = 9.882e-26
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 2 
Query:  701 RCKVNFQALVFVPHIRKLGETIGHLLR 781
            RC+VN+ AL F PHI KL E+I   LR
Sbjct:  225 RCRVNYHALRFKPHIMKLSESIVDKLR 251
The following BLAST results are available for this feature:
BLAST of DY304735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH9.882e-2638.16DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YI23RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304735 ID=DY304735; Name=DY304735; organism=Citrus clementina; type=EST; length=872bp
AAATAATAATAATAAACAATAAAAATAATTTAAGCATTATAAAAAAAAAA
AAAGAAATGAAGCTCTTGTACAACAATCACCACCAGAATCGGACACAGCG
AATGGCTTTCGCCGGTCTCTTCGTAATTCTCTTACCAATTTTCGTCCCAA
ATCTGTTCGAACCGCTGGGCCGAGCCTCGCCGACAATGTTCTCCGAGTGG
AATGCGCCACAACCCAGGCACTCGTCTCTGCTGAAGATCGCTTTACATAG
ACAGATTCCGACCGAACAACAATCTGAACTCTGGTCTCCGTTGGTCAACC
AAGGATGGAGACCCTGTGCTGAATCTACAGCTTTGCCAAAGAAGTCTCGA
GGTTATGTCCAAGTGTTTCTTGATGGTGGTTTAAATCAGCAGAGAATGGG
GATATGCGATGCAGTTGCTGTTGCCAAAATATTGAACGCAACCTTGGTGC
TGCCGCACCTTGAAGTAAATCCGGTTTGGCGAGATTCTAGCTCCTTTGCA
GATATATTTGATGTAGATCACTTTATTTCTTCCTTGCGTGACGAAATCTC
TATAGTTAAAGAGTTACCTAGTGAATACTCTTGGAGCTCTCGGGAGTACT
ATGCTACTGGTATACGGGATACTAGAATTAAAACAGCACCTGTCCACGCT
TCTGCCAACTGGTACCTGGAAAATGTCCTGCCCATATTACAGAGCACCCA
CGGTGTAAAGTCAACTTTCAAGCTTTAGTTTTTGTTCCCCATATTAGGAA
GTTGGGAGAAACTATTGGTCATCTCCTCCGTTACCCTTCCGGGCAAATTT
CACCTCCGGGGACTGAATTCCATAGGGGAAGAAAAGTGATTCTGAAGTCC
CTGGAACCTGGAAATTTCCCGG
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