DY304736

Overview
NameDY304736
Unique NameDY304736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H58_ARATH (Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.441e-44
Identity = 82/126 (65.08%), Postives = 96/126 (76.19%), Query Frame = 2
Query:  296 MERHGRVSEG-SQSDPSPEWTAPGTETGPE---------GLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRG 643
            MER+G   E  S+SDPS EW+A GTETG E         G G G E++PERPDE DCI+Y+RTG C YGSRCRFNHPR+R  V+G  R   GEFPER+GQPVCQ++MRTGTCK+GASCKYHHPR+G
Sbjct:    1 MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQG 126          

HSP 2 Score: 77.7962 bits (190), Expect = 9.102e-14
Identity = 33/95 (34.74%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  353 TAPGTETGPEGLGVG--AESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHH 631
            +AP  ++GP   GV    +++P+RP++ +C +++RTG C +G+ CRF+HP +  S   +  +  G  P R G   C ++ + G CK+G +CK+ H
Sbjct:  277 SAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLSHIG-LPLRPGAVPCTHFAQHGICKFGPACKFDH 370          
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H34_ARATH (Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.102e-43
Identity = 83/129 (64.34%), Postives = 95/129 (73.64%), Query Frame = 2
Query:  296 MERHGRVSE-GSQSDPSPEWTAPGTETGPE------------GLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRG 643
            MER+GR  E GS+SDPS EWT+ G ET  E            G G G ESYPERPDE DCI+Y+RTG C YGSRCRFNHPRDRG+V+G  R   G  PER+G PVCQ++MRTGTCK+GASCKYHHPR+G
Sbjct:    1 MERYGRPGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQG 129          

HSP 2 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 2
Query:  341 SPEWTA-PGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHH 631
            SP  TA  GT          ++ +P+RPD+ +C +++RTG C +GS CR++HP D               P R G   C ++ + G CK+G +CK+ H
Sbjct:  281 SPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378          
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.596e-34
Identity = 66/129 (51.16%), Postives = 89/129 (68.99%), Query Frame = 2
Query:  323 GSQSDPSPEWTAPGTETGPEG----LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRGAWFLLAMCH*IIMVYPLP 697
            GSQS  +P+WT    +TG +     LG+G++SYPERP   DC +Y+RTG C YG+RCR+NHPRDR SV    RA  G++PER G+P CQ+Y++TGTCK+GASCK+HHP+       +M H  + +Y  P
Sbjct:   10 GSQSAQAPDWTPADADTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRA-TGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGG---SMSHVPLNIYGYP 134          

HSP 2 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  314 VSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 634
            V++ + + PS     P   + P G+    +++PERP E +C +Y++TG C +G+ C+F+HPRDR              P R G   C +Y++ G CK+G++CK+ HP
Sbjct:  256 VTQLTSTTPSLPGVYPSLSS-PTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361          
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.709e-28
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 2
Query:  404 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRGA 646
            SYPERP E DC +Y+RTG C +GS CRFNHPRDR  V+  AR   GE+PER+GQP C+YY++TGTCK+G +CK+HHPR  A
Sbjct:   36 SYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARM-RGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKA 115          

HSP 2 Score: 87.4261 bits (215), Expect = 1.149e-16
Identity = 43/117 (36.75%), Postives = 66/117 (56.41%), Query Frame = 2
Query:  296 MERHGRVSEGSQSDPSPEWTAPGTETGPEGL-GVGAES-YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRR 640
            ++++  +  GSQS  S     PG+     G   +  E+ +PERP + +C  Y++TG C +G+ C+F+HPRDR +            P R G+P+C +Y R G CK+G SCK+ HP R
Sbjct:  232 LQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMR 348          
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H6_ORYSJ (Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.915e-28
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  374 GPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVM---GAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRGAWFLLAM 664
            G  G G  A   PERP E DC++Y+RTG C +G RCR+NHPRDRG      GA  A   ++PER GQP+C+YYM+TGTCK+G +CKYHHP++    L  M
Sbjct:   45 GGGGDGDAAGRLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVM 144          

HSP 2 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 38/113 (33.63%), Postives = 55/113 (48.67%), Query Frame = 2
Query:  296 MERHGRVSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 634
            M  HG  S  +   P   +    + TG          +PERP + DC +Y+RTG C +G+ C+++HPR+  +            P R G   C YY + G C+YG +CKY HP
Sbjct:  270 MGHHGSSSTIAYGGP---YVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379          
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.889e-27
Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  308 GRVSEGSQSDPSPEWTAPGTETGPE------------GLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRGA 646
            G V EGS S  +    A     GP             G  + A  YPER  E DC +Y+RTG C +G  C+FNHP DR   + AAR  G E+P+R+GQP CQYY++TGTCK+GA+CK+HHPR  A
Sbjct:    8 GGVGEGSSSSAAAAAAAAAATIGPHVVDEEAMWQMNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKG-EYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKA 131          

HSP 2 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  407 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRGAWFLLA 661
            +PERPD+ +C  Y++TG C +G+ C+F+HP++R              P R G+P+C +Y R G CK+G +CK+ HP     + LA
Sbjct:  306 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGLA 390          
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H5_ORYSJ (Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.889e-27
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  374 GPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGG------EFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRGA 646
            G  G  V A   PERP EADC++Y+RTG C YG  CR+NHPRDR +   A   GGG      E+PER GQPVC+YYM+ GTCK+G++CKY HPR G+
Sbjct:   37 GGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAA--AVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGS 131          

HSP 2 Score: 75.0998 bits (183), Expect = 5.900e-13
Identity = 35/107 (32.71%), Postives = 55/107 (51.40%), Query Frame = 2
Query:  314 VSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 634
            V+ GSQ  P    T P + +  E       ++P RP + +C +Y++TG C +GS C+++HP+   +            P R G   C YY + G CK+G +CK+ HP
Sbjct:  271 VTYGSQYAPLSSSTMPSSSSKQE------PAFPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHP 371          
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H57_ARATH (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.599e-26
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  404 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRGA 646
            SYPER  E DC +Y+RTG C +GS CRFNHP DR  V+  AR  G E+PER+GQP C++Y++TGTCK+G +CK+HHPR  A
Sbjct:   38 SYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKG-EYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKA 117          

HSP 2 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  407 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRR 640
            +PERP + +C  Y++TG C +G+ C+F+HPRDR +            P R G+P+C +Y R G CK+G SCK+ HP R
Sbjct:  240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMR 317          
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.937e-26
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  407 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRGA 646
            YPER  E DC +Y+RTG C +G  CRFNHP+DR   + +AR  G E+PER+GQP CQYY++TGTCK+G +CK+HHPR  A
Sbjct:   77 YPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKG-EYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKA 155          

HSP 2 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  407 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 634
            +PERPD+ +C +Y++TG C +G+ C+F+HPR R              P R G+ +C++Y R G CK+GA+CK+ HP
Sbjct:  329 FPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHP 404          
BLAST of DY304736 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.354e-25
Identity = 65/150 (43.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  323 GSQSDPSPEWTAPGTET------GPEGLGV-------------GAES-----YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRRGAWFLLAMCH*IIMVYPLPP 700
            G + D +   T+PG  +      GP  LGV             G ES     YPER  E DC +Y+RTG C +G  C+FNHP +R   + AAR  G E+P RVGQP CQYY++TGTCK+GA+CK+HHPR  A  L       ++ YP+ P
Sbjct:   11 GGEGDSNGGGTSPGGVSAAAPAIGPHHLGVAAAEEAMWQMTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNG-EYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKA-ALANRVQLNVLGYPMRP 158          

HSP 2 Score: 82.8037 bits (203), Expect = 2.830e-15
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  395 GAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 634
            G   +PERPD+ +C  Y++TG C +G+ C+F+HP++R              P R G+PVC +Y R G CK+G +CK+ HP
Sbjct:  311 GENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHP 390          
The following BLAST results are available for this feature:
BLAST of DY304736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
C3H58_ARATH8.441e-4465.08Zinc finger CCCH domain-containing protein 58 OS=A... [more]
C3H34_ARATH1.102e-4364.34Zinc finger CCCH domain-containing protein 34 OS=A... [more]
C3H32_ARATH1.596e-3451.16Zinc finger CCCH domain-containing protein 32 OS=A... [more]
C3H33_ARATH1.709e-2864.20Zinc finger CCCH domain-containing protein 33 OS=A... [more]
C3H6_ORYSJ2.915e-2854.00Zinc finger CCCH domain-containing protein 6 OS=Or... [more]
C3H63_ORYSJ1.889e-2747.20Zinc finger CCCH domain-containing protein 63 OS=O... [more]
C3H5_ORYSJ1.889e-2756.70Zinc finger CCCH domain-containing protein 5 OS=Or... [more]
C3H57_ARATH1.599e-2660.49Zinc finger CCCH domain-containing protein 57 OS=A... [more]
C3H12_ORYSJ7.937e-2660.00Zinc finger CCCH domain-containing protein 12 OS=O... [more]
C3H66_ORYSJ1.354e-2543.33Zinc finger CCCH domain-containing protein 66 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YI24RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304736 ID=DY304736; Name=DY304736; organism=Citrus clementina; type=EST; length=880bp
AAAGTGTATGTGTGTGTGTGTGTGTGTGTGTGAGTGTTGAGTGAAATATA
GTAGAGAGAGAAAAATCAGAAACCCAAAAACCCCCCATAGCCAAACAGAA
CATAAACGCAGTTCGTGTTCGTGTCTTTGCAAAGAAGAAGAGAAAACGAG
CACACACAAACACGAACGGGCAGTTTTTCTCTCCGATTCGATCGGGGACT
CTCATTGTACATACATTCAATAATTCTCCTTCTCTCCGGTTAGCCTTCTT
TTTCTGCTCTATCCCGGTTCAGTTCGGTTCGACTGCCCGTGCGAAATGGA
GCGGCACGGTCGGGTCAGTGAAGGCTCTCAGTCCGATCCGTCTCCGGAAT
GGACCGCTCCGGGAACCGAAACCGGTCCCGAAGGATTGGGAGTCGGTGCC
GAGTCATATCCAGAGCGGCCTGACGAGGCCGATTGTATTCATTATGTGAG
GACGGGGTTCTGCGCGTACGGGTCGAGGTGTCGGTTCAATCATCCACGTG
ACCGCGGCTCGGTTATGGGAGCTGCAAGAGCAGGTGGAGGCGAATTTCCG
GAGCGGGTGGGCCAGCCAGTTTGTCAGTATTATATGAGGACTGGGACATG
TAAATATGGTGCATCGTGTAAATACCACCATCCCAGGCGGGGAGCCTGGT
TTCTGTTAGCAATGTGTCATTAAATTATTATGGTTTACCCTTTGCCTCCG
GTTTGGAAATTTGTTCCCCTAGGTTAAATTTTTTAGACCCTCCATTATAT
TACAATCCTGGCCTGGTGCATAAGCCAGTTAATCTAACCAAAACCTTGGG
GGTTTTTTCACACCGGGGTGGAAAAAAAATGTTCCTCATCAAGCAGAACA
CAGCAAAGGTAAGTTCAGCTCCCAACGAAA
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