DY304740

Overview
NameDY304740
Unique NameDY304740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304740 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.020e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2 
Query:  683 SLAGDYGFYPLGLSDPESTGGFIEPKWLAYREVINGRYAML 805
            SL GDYGF PLGLSDPE TGGFIEP+WLAY EVINGR+AML
Sbjct:   71 SLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAML 111

HSP 2 Score: 23.8682 bits (50), Expect = 1.020e-14
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3 
Query:  861 ENALGWVPNGVIPP 902
            E AL W   GVIPP
Sbjct:  131 ETALAWFQTGVIPP 144
[Close]
BLAST of DY304740 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.778e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 2 
Query:  686 LAGDYGFYPLGLSDPESTGGFIEPKWLAYREVINGRYAML 805
            L GD+GF PLGLSDPE TGGFIEPKWLAY EVINGR+AML
Sbjct:   70 LPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAML 109

HSP 2 Score: 23.8682 bits (50), Expect = 3.778e-14
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 3 
Query:  861 ENALGWVPNGVIPP 902
            E AL W   GVIPP
Sbjct:  129 ETALAWFQTGVIPP 142
The following BLAST results are available for this feature:
BLAST of DY304740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB23_PEA1.020e-1485.37Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC3.778e-1485.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YJ04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304740 ID=DY304740; Name=DY304740; organism=Citrus clementina; type=EST; length=903bp
AAAAAAGAAAATTAAAAAATGGCAACCCAAGCTTTGGTTTCATCATCTCT
TACATCTTCAGTGGAGACTGCGAGACAAATTCTTGGAGCAAGATCAGCTC
AATCCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGCT
TCTACTCCTCCTGTTAAGGTCTGTTTGTTTCTCCCTCCAAAAGCCTTTTT
TTTTTTTTCCTTTTTTTCCTCTTTTAACAGCAGCTTCTACTCTTTCCGTT
GCTTGAGTGCTAACTTATTTGAGGAAGAAAGAGTTAAAATGCATATTTTT
GTAGTAATTCTCTAAAAACTGTAATCCTAGTTAATGAGGAGAAGCAACTT
TTCTATGAGGGAGTTGCTTATTTTTGCAAAAATAAACCTCTTTGCCTGAA
ACCTTTAGTTGCTTTTGAAGGTCAAGACTCAAGAGTTAATATCATGTTTG
TTTAGTTTGTAATAGTATTCGTTTATATGATTTTTTCAGCAAGGAGCAGA
CAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCA
GGTAACTTATATATGCTTTTTGGCATGAGCAATGATATTTGGACAGAAAA
ATTTGATAGCGCGCTTGTTTCTGTCGGCACTCTGTCAGCACTTCTGCATT
TTTGCATCATTTAGATGTACATTTACTTTTGCAGCCTCGCCGGAGACTAT
GGATTCTACCCACTTGGTCTCTCAGACCCTGAAAGCACAGGAGGGTTCAT
TGAGCCAAAATGGCTGGCCTACCGCGAGGTCATCAACGGTCGTTATGCCA
TGTTGGGAGCTGGGGGACCCATTGCACCGGAAATTCCTGGAAAGGAAGCC
CCATTCCCCAGAAAATGCCCTGGGCTGGGTTCCAAACGGTGTGATCCCCC
CAC
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