DY304745

Overview
NameDY304745
Unique NameDY304745
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1003
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304745 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 4.015e-72
Identity = 159/327 (48.62%), Postives = 190/327 (58.10%), Query Frame = 1
Query:    7 SSTSRRHH------TXXXXXXXXXXXXXXLACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSENH*TAKSMVKRILDSSSDSQNRSRAATTCLQILSYSRARSQSASDTLPRGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGEDFNAWRAPQTERAGFWEKGGSGAA---HFGFRGGFTSKLTADVTVCKDRSCKYKTVQDALNAAPDNVPTNKFVINKKPVFKKRT*GFRSKKKTCYF*ATAWAKGSLQGL*KVGTQGGSH*ETGYVRNFLGKDFKTKGSLHFQKHTG 960
            SS+SR HH      T              LAC ATR+PD C  SLS+   VPP+P P Q+I SAI  S +N  TA+S +K I+DSS  + NR+ AA TCLQ+L+YS  R+QS    L RGK+KDARAW SAAL YQYD WSALKYVNDT QVGETM+FLD L  +TSNALSMM+S+DNFG++  +W  P TER GFWEK G G       G   GF S L  DVTVCKD  C YKTVQDA+NAAP++    KFVI       +       +KK   F      K  + G    G  G +   T  V   +G  F  +  L FQ   G
Sbjct:   18 SSSSRHHHHHNSGDTSPVNPSSSLAAQIRLACNATRYPDQCVSSLSEQGRVPPDPKPIQIIHSAISFSFQNLKTAQSKIKSIVDSSVGNLNRTNAANTCLQLLTYSEHRTQSTDQALTRGKIKDARAWMSAALVYQYDSWSALKYVNDTSQVGETMSFLDGLIHVTSNALSMMVSYDNFGDNVASWTYPATERDGFWEKTGPGLGLDPSTGLNLGFPSGLKEDVTVCKDGKCGYKTVQDAVNAAPEDNGMRKFVIKISEGVYEENVIVPFEKKNVVFIGDGMGKTVITGSLNAGMPGITTYNTATV-GVVGDGFMAR-DLTFQNTAG 342          
BLAST of DY304745 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 9.578e-66
Identity = 143/290 (49.31%), Postives = 182/290 (62.76%), Query Frame = 1
Query:   76 LACKATRFPDVCQQSLSQSHNVPPNPSPAQMIQSAIGVSSENH*TAKSMVKRILDSSSDSQNRSRAATTCLQILSYSRARSQSASDTLPRGKLKDARAWYSAALTYQYDCWSALKYVNDTKQVGETMAFLDSLTGLTSNALSMMMSFDNFGEDFNAWRAPQTERAGFWEKGG-SGAAHFGFRG--GFTSKLTADVTVCKD--RSCKYKTVQDALNAAPDNVPTNKFVINKKPVFKKRT*GFRSKKKTCYF*ATAWAKGSLQGL*KVGTQGGSH*ETGYVRNFLGKDFKTK 930
            LAC ATRFPD C  SLS+   VPP+P P Q+I SAI VS EN  + +S ++ ILDSS+ ++NR+  AT CL+ILSYS+ R++S    +  G +KDARAW SAAL YQ+DCWS LK VNDTKQV +T+ F + L  LT NALSMM+SFD+FG+D  +W  P TER GFWEK G S  +  G     GF S LT DVTVCK+  + CKYKTVQ+A+++APD   T KFVI  +    + T     +KK   F      K  + G   VG  G +  E+  V   LG  F  +
Sbjct:   95 LACNATRFPDHCVASLSKPGQVPPDPKPVQIIHSAISVSYENLKSGQSKIQSILDSSAGNRNRTNIATICLEILSYSQHRTESTDIAVTSGDIKDARAWMSAALAYQFDCWSGLKTVNDTKQVVDTITFFEGLVNLTGNALSMMLSFDSFGDDVVSWIRPATERDGFWEKAGPSLGSGTGTEASLGFPSGLTEDVTVCKNGGKDCKYKTVQEAVDSAPDTNRTVKFVIRIREGVYEETVRVPFEKKNVVFIGDGMGKTVITGSLNVGQPGMTTFESATV-GVLGDGFMAR 383          
The following BLAST results are available for this feature:
BLAST of DY304745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PME51_ARATH4.015e-7248.62Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME64_ARATH9.578e-6649.31Probable pectinesterase/pectinesterase inhibitor 6... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YJ09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304745 ID=DY304745; Name=DY304745; organism=Citrus clementina; type=EST; length=1003bp
CTTTCTTCTTCAACCTCTCGTCGTCACCACACTCCCCTGCAACAGCAGCA
ACAACCGCCAGTCCCTCAAATCCAGCTCGCCTGCAAGGCCACTCGCTTCC
CCGACGTGTGCCAGCAATCCCTCTCCCAATCCCACAACGTCCCCCCTAAT
CCCTCCCCCGCGCAAATGATCCAATCCGCCATCGGGGTCTCCTCCGAAAA
CCACTAGACCGCCAAATCGATGGTGAAGCGGATCCTCGACTCCTCCTCCG
ACAGTCAGAACCGCTCCCGGGCCGCCACCACGTGTCTCCAGATCCTCAGC
TACTCCAGGGCGAGGTCCCAGTCGGCCTCCGACACGCTGCCGCGTGGGAA
ACTCAAGGACGCGCGCGCATGGTACAGTGCGGCCCTCACTTACCAGTACG
ACTGCTGGTCGGCGCTCAAGTACGTTAACGACACCAAGCAGGTGGGCGAA
ACGATGGCGTTTTTGGACTCCCTGACTGGGCTGACGAGCAATGCGCTGAG
TATGATGATGTCGTTTGATAATTTTGGCGAAGATTTTAACGCGTGGCGGG
CCCCCCAGACGGAGCGGGCCGGGTTTTGGGAGAAGGGCGGGTCGGGCGCG
GCCCATTTCGGTTTTCGTGGCGGGTTCACGTCAAAGTTGACGGCGGACGT
GACGGTTTGTAAGGACCGGAGTTGTAAGTACAAAACGGTGCAAGACGCCT
TGAATGCCGCACCGGACAATGTGCCGACGAACAAGTTTGTGATTAACAAA
AAGCCCGTGTTTAAGAAGAGAACATAAGGGTTCCGTTCGAAAAAAAAAAC
GTGTTATTTTTAGGCAACGGCTTGGGCCAAAGGGTCATTACAGGGTCTTT
AAAAGGTGGGAACACAAGGGGGTAGCCATTAAGAAACCGGATACGTTCGG
AATTTCTTGGGGAAAGATTTCAAGACAAAAGGGTCCCTCCATTTTCAAAA
ACACACCGGGGCCCGGGTGGCCCTACCAAAACCTGGGCCTTTTTATTTCC
AAA
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