DY304746

Overview
NameDY304746
Unique NameDY304746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304746 vs. ExPASy Swiss-Prot
Match: Y875_SYNY3 (Uncharacterized membrane protein sll0875 OS=Synechocystis sp. (strain PCC 6803) GN=sll0875 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.177e-38
Identity = 87/182 (47.80%), Postives = 116/182 (63.74%), Query Frame = 3
Query:  171 WQSALLNNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLW-QLGFVASFCTTLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVNVEGTFAGIFAFLFLAWDGLSKG 713
            W SA++ N  +  L +      L+P G   A++LG + W A G  G+L+V  YF +G+A T++   +KEA G+AEKR G+RGP +V GS+    +CA    FG   ++   LW  LG+VASF T LSDT +SE+GKAYGK T+L+TT + VPRGTEGAV+VEGT AG  A L LA  G   G
Sbjct:   18 WLSAVILNSFLLALAAIAPKKLLTPWGYGHAWVLGVIIWAALGWRGYLVVLAYFFVGSAVTRIGQKEKEAAGIAEKRSGQRGPENVWGSALTAALCALAIAFGPEPWQ---LWLALGYVASFSTKLSDTTASEVGKAYGKNTFLITTLQPVPRGTEGAVSVEGTLAGFAAGLALAVLGYGVG 196          
BLAST of DY304746 vs. ExPASy Swiss-Prot
Match: Y933_METJA (Uncharacterized membrane protein MJ0933 OS=Methanocaldococcus jannaschii GN=MJ0933 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.229e-12
Identity = 46/151 (30.46%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  237 LSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLWQL-GFVASFCTTLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVNVEGTFAGIF-AFL 683
            L   G+  + ++G +     G    +L+ ++FI+G   ++V + +K+A+ + E  +  +   +V+ +     + A L+IFG         W L G+++S     SDT SSE+G    +   L+TTF+VV +GT+GA+ + GT AG+  AFL
Sbjct:   32 LDNEGVIGSSIMGFILLYFCGFKYLILLLSFFILGVLVSRVGLEKKKAKKMDETCRSLK---NVLANGLIPILFAILAIFGFN-------WALIGYISSIAAATSDTFSSELGILSNEKPRLITTFEVVEKGTDGAITIFGTLAGVLGAFL 172          
The following BLAST results are available for this feature:
BLAST of DY304746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y875_SYNY31.177e-3847.80Uncharacterized membrane protein sll0875 OS=Synech... [more]
Y933_METJA3.229e-1230.46Uncharacterized membrane protein MJ0933 OS=Methano... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ9YJ10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304746 ID=DY304746; Name=DY304746; organism=Citrus clementina; type=EST; length=941bp
GGGAAGACATTAAATTACGATTTCCCATTTTAAGAGACCCTAACATTTCC
TTTTATACTTCCAATTGCAACAGCAGTAAAATGTTGTTGCTTCACAGAGC
CAACGCGGCTCCTTCGTTGCAAGTCGCAGTATCGGAGGCCATGAACCTGG
TTCAATTGTCTCAGCCCACGTGGCAGTCCGCTCTGCTCAACAACGTCGTC
ATCTTCGTCTTAGGCTCTCCGATTTTGGTCTCCGGTTTGTCTCCCTCAGG
AATCGCCGCCGCCTTCTTGCTCGGCACGCTCACGTGGCGAGCGTTCGGCC
CCTCCGGCTTTCTCCTCGTCGCCACTTACTTCATCATCGGTACAGCGGCA
ACGAAAGTGAAAATGGCTCAAAAGGAAGCTCAAGGGGTAGCTGAGAAGAG
GAAAGGAAGGCGTGGACCGGGCAGTGTGATTGGTTCCAGTGCTGCTGGTT
GTGTCTGTGCTTTTCTTTCGATTTTCGGAGTAGGGGGGTTTGAGTTTTCT
CGGCTTTGGCAACTGGGGTTTGTCGCCAGTTTCTGTACTACGTTGAGTGA
TACTGTCTCGAGCGAGATAGGCAAAGCATATGGCAAAACGACGTACCTAG
TAACAACATTTAAAGTTGTTCCTAGGGGAACGGAAGGAGCTGTCAATGTT
GAGGGAACATTTGCTGGCATTTTTGCTTTCCTTTTTCTTGCTTGGGATGG
GTTGTCAAAAGGCCAAAGTATCACAAATTAGTGTCACCTTCCATTTGCTT
TCAAATTTCACTGCCGAAAGCTTGACAAATAATTTCATTTGTTACGTCCC
CTTTTTCATAACGGGCAAAAATTTGTCCAAGCGCAAGCACGATATGTCAA
GATAGGTTTAAATAAGCCTTGTTTTTTTTTTAAAAAAAATTTTTTTTTGG
ACAATCCCCGTTGAAATTTCGAACCTTCTAAACCTCGAAAA
back to top