DY304753

Overview
NameDY304753
Unique NameDY304753
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_DESPS (Cysteinyl-tRNA synthetase OS=Desulfotalea psychrophila GN=cysS PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.538e-61
Identity = 102/196 (52.04%), Postives = 146/196 (74.49%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            R+A++FD++ RYL +L  +VT+VRNFTD+DDKII RAN+ G    +L+ R+  E+  DM +L  L P  +P+ ++H++++ D+I ++++ D AY   GDV++ V   P YG+LSG+ +E+ +AG R++++ +KRNP DFALWKA+K GEPSW+SPWGPGRPGW IECSAM+  YL   F+IHGGG D  FPH ENE
Sbjct:   43 RSALAFDMIVRYLRYLDYKVTFVRNFTDIDDKIIARANETGVTAQALAERFIDEFHTDMDNLGTLRPDIEPKATEHIQEMIDIIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNIEDMQAGARISINEQKRNPMDFALWKASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGENFDIHGGGKDLIFPHHENE 238          
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_SYNFM (Cysteinyl-tRNA synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=cysS PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.901e-60
Identity = 109/196 (55.61%), Postives = 139/196 (70.92%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            R+A+ FD++YRYL  L  EVTYVRNFTDVDDKIIRRAND G +  S++ RY   +  DM  L  L P  +P  ++++  + ++I  +++   AY    DVFF +EK P YG+LSG+++E+  AG RV VD+RKRNP DF LWK +K GEPSWDSPWGPGRPGW IECSAM + +L   F+IHGGG D  FPH ENE
Sbjct:   43 RSAIVFDVIYRYLRFLGFEVTYVRNFTDVDDKIIRRANDAGTDCRSIAQRYIAAFYEDMDALGVLRPDLEPLATENVPGMIEIIRVLMDKGIAYQAGADVFFEIEKFPGYGKLSGRQIEDMLAGARVEVDARKRNPLDFVLWKGSKPGEPSWDSPWGPGRPGWHIECSAMGSRFLGKTFDIHGGGKDLIFPHHENE 238          
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_THISH (Cysteinyl-tRNA synthetase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=cysS PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.789e-60
Identity = 111/197 (56.35%), Postives = 142/197 (72.08%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            R  V FD++YRYL+ L  +VTY+RN TD+DDKIIRRA + GE+  +L++R+      D   L  LPP+ +PR ++H++ +  MI  ++    AY  + GDV++AV K   YGRLSG+RLE+ RAGERVA D  KR+P DF LWKAAK GEP+WDSPWGPGRPGW IECSAM+ HYL + F+IHGGG D  FPH ENE
Sbjct:   42 RVLVVFDVVYRYLKALGFDVTYIRNITDIDDKIIRRAAENGEDIRALTDRFIAAMHEDAEALGVLPPSAEPRATEHIDGMLAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSGKRLEDLRAGERVAPDEAKRDPLDFVLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYLGNHFDIHGGGQDLQFPHHENE 238          
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_PELPD (Cysteinyl-tRNA synthetase OS=Pelobacter propionicus (strain DSM 2379) GN=cysS PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.948e-60
Identity = 113/196 (57.65%), Postives = 136/196 (69.39%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            RA V FD++YRYL +    VTYVRNFTD+DDKII RAN  G +  ++S RY + +  DMA L    PT +P+ +DHM  I  +I  +I    AY  +GDV++AVE  P+Y RLSG+ LE+  AG RV VD RKRNP DFALWK +K GEPSWDSPWG GRPGW IECSAM+  YL   F+IHGGG D  FPH ENE
Sbjct:   43 RANVVFDVIYRYLGYSGYAVTYVRNFTDIDDKIINRANQEGVDYTTISERYIEAFNQDMARLGLAKPTVEPKATDHMGGIISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDRKRNPMDFALWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPHHENE 238          
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_HELMI (Cysteinyl-tRNA synthetase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=cysS PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.440e-59
Identity = 107/196 (54.59%), Postives = 138/196 (70.41%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            R  V FD + RYLEH+  EV Y++NFTD+DDKII RA ++GE+P++++ R+ +EY  D   L   P T  P+VS HM +I  MI  ++    AY + GDV+F++    +YG+LSG+ LE+ +AG RV V+ RKR+P DFALWK AK GEPSWDSPWG GRPGW IECSAM+  YL   F+IHGGG D  FPH ENE
Sbjct:   43 RPLVVFDTIRRYLEHVGYEVVYIQNFTDIDDKIIHRAKEIGEDPIAMAARFVEEYYRDAKALNVRPATIHPKVSAHMAEIIAMIGVLVEKGHAYELGGDVYFSIPSFKDYGKLSGRSLEDLQAGARVDVNERKRHPMDFALWKGAKPGEPSWDSPWGKGRPGWHIECSAMSRKYLGDAFDIHGGGQDLIFPHHENE 238          
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_PELTS (Cysteinyl-tRNA synthetase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=cysS PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.880e-59
Identity = 110/196 (56.12%), Postives = 135/196 (68.88%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            R  V FD + RYL H   EV +V+NFTDVDDKII RA + G++PL+L+ RY  EY  D   L        P VS+H+  I  M+ +++    AYVV+G+V+F V K   YG+LSG+ LE+ +AG RV VD RKR+P DFALWKAAK GEP WDSPWGPGRPGW IECSAM+  YL + F+IHGGG D  FPH ENE
Sbjct:   41 RPLVFFDTVRRYLIHKGYEVLFVQNFTDVDDKIINRAQEEGDDPLALARRYIGEYFKDADALNVRRADRHPLVSEHIPDIIKMVDELVKKGAAYVVDGNVYFEVRKFAGYGKLSGRTLEDMQAGARVEVDPRKRDPLDFALWKAAKPGEPCWDSPWGPGRPGWHIECSAMSLKYLGTNFDIHGGGYDLIFPHHENE 236          
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_GEOLS (Cysteinyl-tRNA synthetase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=cysS PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.207e-59
Identity = 107/196 (54.59%), Postives = 139/196 (70.92%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            RA + FD++YRYL     +VTY+RN+TD+DDKII RAN  G +  ++++RY   +  DM  L  L PT +P+ +DH+E I  +I ++I+N  AY V+GDV+FAVE  P Y +LSG+ L++  AG RV VD RKRNP DFALWK +K GEP W+SPWG GRPGW IECSAM+  +L   F+IHGGG D  FPH ENE
Sbjct:   43 RAGIVFDMIYRYLRFSGYDVTYIRNYTDIDDKIINRANQEGTDYRTIADRYIATFDEDMDRLGMLRPTIEPKATDHIEDIISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNLDDMLAGARVDVDERKRNPMDFALWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPHHENE 238          
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_DESRM (Cysteinyl-tRNA synthetase OS=Desulfotomaculum reducens (strain MI-1) GN=cysS PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.546e-58
Identity = 109/196 (55.61%), Postives = 137/196 (69.90%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            R  V FD + RY  +   +V YV+NFTDVDDKII RA +   +PL L+ +Y QE+ VD   L  +     P+VS+H+E+I D+I ++ +   AYVV+GDV+FAV     YG+LSG+ LE+ +AG RV VD RK++P DFALWKAAK GEPSWDSPWG GRPGW IECSAM   YL + F+IHGGG D  FPH ENE
Sbjct:   41 RPLVFFDTVRRYFLYKGYKVDYVQNFTDVDDKIINRAAEEKIDPLELAQKYIQEFFVDADALNVMRADTHPKVSEHIEEIIDLIKRLEDQGHAYVVDGDVYFAVRSFAEYGKLSGRSLEDMQAGARVEVDPRKKDPMDFALWKAAKPGEPSWDSPWGSGRPGWHIECSAMAEKYLGNGFDIHGGGFDLIFPHHENE 236          
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_ALHEH (Cysteinyl-tRNA synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=cysS PE=3 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.546e-58
Identity = 108/197 (54.82%), Postives = 137/197 (69.54%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            RA V FD++ RYL HL   VT+VRN TD+DDKIIRRA +LGE   +++ R+ +    D   L  LPP ++PR + H++ I  MI +++    AYV + GDV+FAV   P YG+LSG+R E+ RAG RV VD  KR+P DFALWKAA+ GEP+W SPWG GRPGW IECSAM+   L   F+IHGGG+D  FPH ENE
Sbjct:   42 RALVVFDMVARYLRHLGYRVTFVRNITDIDDKIIRRAAELGEPMGAVTERFIRAMHEDAEALGVLPPDHEPRATGHIDDIIAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSGERQEDLRAGARVEVDEGKRDPVDFALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFPHHENE 238          
BLAST of DY304753 vs. ExPASy Swiss-Prot
Match: SYC_PELCD (Cysteinyl-tRNA synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=cysS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.049e-58
Identity = 103/196 (52.55%), Postives = 140/196 (71.43%), Query Frame = 3
Query:    3 RAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWDIECSAMTAHYLSSKFEIHGGGIDFNFPHPENE 590
            RA V FD++YRYL+ +  +VTYVRN+TDVDDKII+RAN+ G +  +L+  + Q +  DM  L    PT QP+ + H++ I +++ ++I+   AY  +GDV+F+VE  P+Y +LS + ++  R+G R+    +KRNP DFALWKAAK GEPSW+SPWGPGRPGW IECSAM+  YL   F+IHGGG D  FPH ENE
Sbjct:   43 RANVVFDIIYRYLQFIGFDVTYVRNYTDVDDKIIKRANERGISSDTLAGEFIQAFDEDMNRLGLAEPTIQPKATCHIDHIVNLVQRLIDRGIAYESQGDVYFSVEDFPSYLKLSKRNMDEMRSGARITPGEQKRNPMDFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSMEYLGESFDIHGGGKDLVFPHHENE 238          
The following BLAST results are available for this feature:
BLAST of DY304753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYC_DESPS1.538e-6152.04Cysteinyl-tRNA synthetase OS=Desulfotalea psychrop... [more]
SYC_SYNFM2.901e-6055.61Cysteinyl-tRNA synthetase OS=Syntrophobacter fumar... [more]
SYC_THISH3.789e-6056.35Cysteinyl-tRNA synthetase OS=Thioalkalivibrio sp. ... [more]
SYC_PELPD4.948e-6057.65Cysteinyl-tRNA synthetase OS=Pelobacter propionicu... [more]
SYC_HELMI1.440e-5954.59Cysteinyl-tRNA synthetase OS=Heliobacterium modest... [more]
SYC_PELTS1.880e-5956.12Cysteinyl-tRNA synthetase OS=Pelotomaculum thermop... [more]
SYC_GEOLS3.207e-5954.59Cysteinyl-tRNA synthetase OS=Geobacter lovleyi (st... [more]
SYC_DESRM3.546e-5855.61Cysteinyl-tRNA synthetase OS=Desulfotomaculum redu... [more]
SYC_ALHEH3.546e-5854.82Cysteinyl-tRNA synthetase OS=Alkalilimnicola ehrli... [more]
SYC_PELCD6.049e-5852.55Cysteinyl-tRNA synthetase OS=Pelobacter carbinolic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YJ17RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304753 ID=DY304753; Name=DY304753; organism=Citrus clementina; type=EST; length=749bp
CTCGCGCCGCCGTTTCATTTGACCTTCTTTACAGATACTTAGAACATCTA
AAGTGTGAAGTCACTTATGTTCGGAATTTCACTGATGTAGATGACAAGAT
AATTCGAAGGGCAAATGACCTTGGCGAAAATCCTTTAAGTTTAAGTAACC
GATATTGCCAAGAATATCTGGTTGACATGGCTGATCTGCAGTGCCTCCCT
CCCACCTATCAGCCACGCGTGTCTGATCACATGGAACAAATCAAGGATAT
GATAACCCAGATTATCAACAACGATTGTGCATATGTGGTTGAGGGAGATG
TTTTCTTTGCTGTTGAAAAGTCTCCAAACTATGGTCGATTATCAGGACAG
AGGCTGGAAAACAATAGAGCTGGTGAGCGTGTGGCTGTTGACTCTAGAAA
GCGTAATCCTGCTGACTTTGCCCTGTGGAAGGCAGCGAAGGCTGGGGAGC
CAAGTTGGGACAGCCCTTGGGGTCCAGGAAGACCAGGGTGGGATATAGAA
TGCAGTGCAATGACTGCTCATTATTTGTCTTCCAAGTTTGAAATTCATGG
GGGAGGAATTGATTTTAATTTTCCGCATCCAGAAAATGAAAATTGCCACA
ATTTTAAGCTGCAGGCCAAAAAAACAAGGTAAACTACTTGATCGGCCCAG
GGGGAAGGTTATCGGAAGCATGAAGAAAATGGAAAAATCAAATGGGGCCT
TTTTGTTTCCCACTCCTCAAAATTAAGTAACCATACCTGTCACCCGGGC
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