DY304757

Overview
NameDY304757
Unique NameDY304757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 7.899e-79
Identity = 147/201 (73.13%), Postives = 164/201 (81.59%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQN------IVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSFR IV+D+RD FGSLSRRSFDFRL+              +  +      +++Q S WA+LPPELL DVIKRLEESES+WPARKHVVACA+VCRSWRAMC+EIV  PE CGKLTFPVSLKQPG RD  IQCFIKRDKS LT+HLFLCLSPALLVENGKFLLSAKRTRRTT TEY+ISMDADN SRS++ Y+GKLRSNFLG
Sbjct:    1 MSFRGIVQDLRDGFGSLSRRSFDFRLSSLHKGKAQGSSFREYSSSRDLLSPVIVQTSRWANLPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLRSNFLG 201          
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.298e-78
Identity = 149/199 (74.87%), Postives = 166/199 (83.42%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXN--DLHDQNIV--IQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSFRSIVRDVRDS GSLSRRSFDF+L+           +  D H++ +V  IQ + WA+LPPELL DVIKRLEESES WPAR+HVVACA+VCRSWR MCKEIV+SPE  GK+TFPVSLKQPG RD T+QCFIKRDKSNLTYHL+LCLSPALLVENGKFLLSAKR RRTT TEYVISM AD  SRS++ YIGK+RSNFLG
Sbjct:    1 MSFRSIVRDVRDSIGSLSRRSFDFKLSSLNKEGGKSRGSVQDSHEEQLVVTIQETPWANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHADTISRSSNTYIGKIRSNFLG 199          
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.944e-78
Identity = 145/201 (72.14%), Postives = 164/201 (81.59%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFDFRL------TXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSFRSIVRDVRDSFGSLSRRSF+  L      T           ++L D +++IQ S WASLPPELL DVI+RLE SES+WP+RK VV+CAAVC++WR MCKEIV SPEFCGKLTFP+SLKQPG RDG IQCFIKRDKS  TYHL+LCLS A+L ++GKFLLSAKR R+TTCTEYVISMDADN SRS+S YIGKLRSNFLG
Sbjct:    1 MSFRSIVRDVRDSFGSLSRRSFEVTLAGLSGLTGHHRGKSQSTVHELCDADLIIQESRWASLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNFLG 201          

HSP 2 Score: 26.1794 bits (56), Expect = 3.944e-78
Identity = 13/29 (44.83%), Postives = 16/29 (55.17%), Query Frame = 1
Query:  778 KVEVKFPGTKFII*EHTPPHTSAKITPSG 864
            K+   F GTKFII +  P +  A I P G
Sbjct:  194 KLRSNFLGTKFIIYDTQPSYNGAVIPPVG 222          
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.776e-75
Identity = 135/195 (69.23%), Postives = 160/195 (82.05%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSFRSIVRDVRD FGSLSRR F+ R+            ++LHD   VIQ+SCWASLPPELL D+I+RLEESE++WP+RKHVVACA VCR+WR MCKEIV++PE CGK+TFP+SL+QPG RDGT+QCFI+RDKS  TY+L+L L  A+LV+NGKFLLSAKR    TCTEYVISM+A+N SRST+  IGKLRSNFLG
Sbjct:    1 MSFRSIVRDVRDGFGSLSRRGFEVRILGHRRGKSHGAVHELHDPVPVIQSSCWASLPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKITFPISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTNTNIGKLRSNFLG 195          

HSP 2 Score: 23.0978 bits (48), Expect = 1.776e-75
Identity = 11/31 (35.48%), Postives = 17/31 (54.84%), Query Frame = 1
Query:  778 KVEVKFPGTKFII*EHTPPHTSAKITPSGCT 870
            K+   F GTKF+I +   P+ +   + SG T
Sbjct:  188 KLRSNFLGTKFVIYDTHTPYNATSDSQSGKT 218          
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 4.301e-74
Identity = 136/201 (67.66%), Postives = 161/201 (80.10%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFDFR------LTXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSFRSIVRDVRDSFGSLSRRSF+ R      L+           ++L D+ +V+  S W  LPPELL DV+KRLEE ES+WP+RK VVACAAVCR+WR +CK+IV+SPE CGKLTFPVSLKQPG RDG IQCFIKRDKS LTY+L+LCLSPA+L ENGKFLL+AKR RR T TEY+IS+D+ N SRS++ Y+GK+RSNFLG
Sbjct:    1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNFLG 201          

HSP 2 Score: 23.483 bits (49), Expect = 4.301e-74
Identity = 8/25 (32.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:  778 KVEVKFPGTKFII*EHTPPHTSAKI 852
            K+   F GTKF++ +  PP+ +  +
Sbjct:  194 KMRSNFLGTKFVVYDTQPPYNAGSL 218          
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.610e-74
Identity = 136/201 (67.66%), Postives = 160/201 (79.60%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQNI------VIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSFRSIVRDVRD FGSLSRR F+ RL            ++L D +       V+Q+SCWA+LPPELL DVI+RLE SE++WP+RK+VVACAAVCR+WR MC+EIV++PEFCGK+TFPVSLKQPG R+G IQCFIKRDKS  TY+L+LCLS A+LVE+GKFLLSAKR  R TCTEY I M ADN SRS++ YIGKLRSN LG
Sbjct:    1 MSFRSIVRDVRDGFGSLSRRGFEVRLVGHRRGRSHSAVHELRDGHAAAAAADVVQSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLLG 201          

HSP 2 Score: 26.1794 bits (56), Expect = 5.610e-74
Identity = 12/31 (38.71%), Postives = 18/31 (58.06%), Query Frame = 1
Query:  778 KVEVKFPGTKFII*EHTPPHTSAKITPSGCT 870
            K+     GTKF+I +  PP  +A ++ SG T
Sbjct:  194 KLRSNLLGTKFVIYDTQPPCNTANVSQSGKT 224          
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 2.760e-73
Identity = 136/198 (68.69%), Postives = 160/198 (80.81%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXX---NDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSFRSIVRD RDSFG+LS+RSF+ +++              ++L D  +V Q S WA LPPELL DV+KRLEE +S+WP+RK VVACA+VC +WR MCK+IVR+PEFCGKLTFPVSLKQPG RDG IQCFIKRDKS LTYHL+LCLS A+L E GKFLLSAKR+RRTT T+Y+ISMD+ N SRS+S YIGKLRSNFLG
Sbjct:    1 MSFRSIVRDFRDSFGTLSKRSFEVKISGFSGRHRGKSIGPSSELDDTPVVAQQSKWAGLPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNFLG 198          

HSP 2 Score: 23.483 bits (49), Expect = 2.760e-73
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  778 KVEVKFPGTKFII*EHTPPHTS 843
            K+   F GTKFII +  PP+ +
Sbjct:  191 KLRSNFLGTKFIIYDTQPPYNA 212          
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 1.772e-72
Identity = 137/197 (69.54%), Postives = 162/197 (82.23%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXN-DLHDQN-IVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSF SIVRDVRD+ GS SRRSFD R++             + H ++ IVI+N+ WA+LP  LL DV+K+L+ESES+WPARK VVACA VC++WR MCK+IV+SPEF GKLTFPVSLKQPG RDG IQC+IKRDKSN+TYHL+L LSPA+LVE+GKFLLSAKR+RR T TEYVISMDADN SRS+S YIGKL+SNFLG
Sbjct:    1 MSFLSIVRDVRDTVGSFSRRSFDVRVSNGTTHQRSKSHGVEAHIEDLIVIKNTRWANLPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDADNISRSSSTYIGKLKSNFLG 197          

HSP 2 Score: 24.2534 bits (51), Expect = 1.772e-72
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  778 KVEVKFPGTKFII*EHTPPHTSAKI 852
            K++  F GTKFI+ +  P + S++I
Sbjct:  190 KLKSNFLGTKFIVYDTAPAYNSSQI 214          
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.496e-66
Identity = 127/201 (63.18%), Postives = 150/201 (74.63%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFD------FRLTXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSFRSIVRDVRD FGSLSRRSF+      + LT           ++L D   +I  S WASLPPELL +VI+RLE  ES+WP+R++VV  AAVCR+WR MCKE V SPEFCGKLTFPVS+KQPG RDG IQC+IKR++S  TYHL+LCLS  +  E GKF+L+AKR R+TTCTEY ISM + N SRS+   IGKLRSNFLG
Sbjct:    1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVSGNISRSSRTNIGKLRSNFLG 201          
BLAST of DY304757 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.227e-55
Identity = 104/198 (52.53%), Postives = 144/198 (72.73%), Query Frame = 2
Query:  218 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQNIVI---QNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNFSRSTSPYIGKLRSNFLG 802
            MSF+S+++D+R   GS+SR+ FD R               + D ++ +   + SCWAS+PPELL DV+ R+E+SE +WP+RK+VV+CA VCR+WR + KEIVR PE   KLTFP+SLKQPG R   +QC+I R++SN TY+L+L L+ A   ++GKFLL+AKR RR TCT+Y+IS++ D+ SR ++ YIGKLRSNFLG
Sbjct:    1 MSFKSLIQDMRGELGSISRKGFDVRFGYGRSRSQRV----VQDTSVPVDAFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNFLG 194          
The following BLAST results are available for this feature:
BLAST of DY304757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP10_ARATH7.899e-7973.13Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP1_ARATH2.298e-7874.87Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP8_ORYSJ3.944e-7872.14Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP13_ORYSJ1.776e-7569.23Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP12_ORYSJ4.301e-7467.66Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP14_ORYSJ5.610e-7467.66Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP7_ORYSJ2.760e-7368.69Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP5_ARATH1.772e-7269.54Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP3_ORYSJ4.496e-6663.18Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP3_ARATH1.227e-5552.53Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YJ22RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304757 ID=DY304757; Name=DY304757; organism=Citrus clementina; type=EST; length=870bp
CAAGAACTATAAAGAAGAGGGTGTTAGTTTATGTTATGTTACCAGCTATG
TTCTGTTTCTGACTTGACTTTGCAGATATTGAGATCTTTTGGTGGTGCTT
GGAGTCTTTGACCAGCTTTATTTAACAGCCATAAATACATGACTTGTAGA
ATATAATTTATCGGAAGTCTTCAAAAGGGTGATATACTTGTGCTGCTGCT
TCTGAATAATTTATAAGATGTCATTCCGTAGCATAGTACGTGATGTAAGA
GATAGTTTCGGGAGTTTATCTAGAAGAAGTTTCGATTTTAGATTGACTGG
CCATCATGGAGGGAAATCCCATGGTTCGTCAAACGATTTGCATGACCAGA
ATATTGTAATTCAAAATAGTTGTTGGGCTAGTCTCCCACCAGAGCTACTT
TGTGATGTAATCAAGAGGTTGGAGGAGAGTGAGAGTTCTTGGCCCGCTCG
AAAACATGTTGTTGCGTGTGCTGCTGTTTGCCGTTCTTGGAGGGCTATGT
GCAAAGAAATTGTTAGAAGTCCAGAGTTCTGTGGGAAGCTTACTTTCCCA
GTGTCCTTGAAGCAGCCTGGGGCACGTGATGGAACCATTCAATGTTTCAT
TAAGAGGGATAAATCTAATTTAACATATCACCTTTTTTTGTGTCTTAGCC
CTGCTTTACTAGTTGAAAATGGAAAATTCCTTCTGTCCGCGAAAAGGACC
CGTCGAACTACTTGTACAGAGTATGTAATCTCCATGGATGCGGACAACTT
TTCAAGATCAACCAGCCCTTATATCGGAAAGTTGAGGTCAAATTTCCTGG
GACCAAATTTATAATATAAGAACACACGCCACCACATACCTCTGCTAAAA
TAACCCCTTCGGGATGTACA
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