DY304760

Overview
NameDY304760
Unique NameDY304760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length921
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_SERP5 (Probable phosphoglycerate mutase gpmB OS=Serratia proteamaculans (strain 568) GN=gpmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.929e-15
Identity = 63/190 (33.16%), Postives = 91/190 (47.89%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTK-ILAHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 764
            +V LVRHG++ WNA  RIQG SD S LT  GE QA    Q +  +      +S L R++RTA+II      E++ D  LRE+ +    G+L+        P   QW+    + + DG  P    + EL  R R      ++  E    L+V+H      L++T +GL     R L   NC +S +D   S
Sbjct:    3 QVYLVRHGETEWNAARRIQGQSD-SPLTANGEHQARLVAQRVSKQGITHVITSDLGRTRRTAQIIAEACGCEVINDPRLRELHM----GVLEERLIDSLTPQEEQWRKQMVDGTADGRIPQGESMSELGDRMREALESCLMLPEGSKPLIVSHGIALGCLISTVLGLPAYAERRLRLRNCSLSRVDHQQS 187
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_SALTI (Probable phosphoglycerate mutase gpmB OS=Salmonella typhi GN=gpmB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.702e-15
Identity = 67/190 (35.26%), Postives = 90/190 (47.37%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 764
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D+ LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDFRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_SALCH (Probable phosphoglycerate mutase gpmB OS=Salmonella choleraesuis GN=gpmB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.753e-15
Identity = 68/190 (35.79%), Postives = 90/190 (47.37%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 764
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +     S     SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLSITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_CITK8 (Probable phosphoglycerate mutase gpmB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=gpmB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.493e-14
Identity = 66/191 (34.55%), Postives = 91/191 (47.64%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPSV 767
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R++RTAEII      +I  D  LRE+D+    G+L+             W+    N ++DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S+
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARTLGITHIVSSDLGRTRRTAEIIAQACGCDITFDARLRELDM----GVLEKRHIDTLTEEEENWRRQLVNGTVDGRIPDGESMQELSDRVNAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRVDYQESL 188
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_SALTY (Probable phosphoglycerate mutase gpmB OS=Salmonella typhimurium GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.547e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 764
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_SALSV (Probable phosphoglycerate mutase gpmB OS=Salmonella schwarzengrund (strain CVM19633) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.547e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 764
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_SALPB (Probable phosphoglycerate mutase gpmB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.547e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 764
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_SALPA (Probable phosphoglycerate mutase gpmB OS=Salmonella paratyphi A GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.547e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 764
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_SALNS (Probable phosphoglycerate mutase gpmB OS=Salmonella newport (strain SL254) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.547e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 764
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
[Close]
BLAST of DY304760 vs. ExPASy Swiss-Prot
Match: GPMB_SALHS (Probable phosphoglycerate mutase gpmB OS=Salmonella heidelberg (strain SL476) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.547e-14
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 3 
Query:  210 RVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGEAQAETSRQMLFDESFDVCFSSPLIRSKRTAEIIWGNRKEEILTDYDLREIDLYSFQGLLKHEGKAKFGPAYHQWQVNPANFSIDGHYP----VRELWARARNCWTKIL-AHESKSVLVVAHNAVNQALVATAIGLGTGFFRILLQSNCGVSVLDFTPS 764
            +V LVRHG++ WNAE RIQG SD S LT KGE QA    +           SS L R+KRTAEII      +I  D  LRE+D+    G+L+             W+    N + DG  P    ++EL  R        L   +    L+V+H      LV+T +GL     R L   NC +S +D+  S
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSD-SPLTAKGEQQAMQVGERARSLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDM----GVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRIDYQES 187
The following BLAST results are available for this feature:
BLAST of DY304760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GPMB_SERP53.929e-1533.16Probable phosphoglycerate mutase gpmB OS=Serratia ... [more]
GPMB_SALTI6.702e-1535.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALCH8.753e-1535.79Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_CITK81.493e-1434.55Probable phosphoglycerate mutase gpmB OS=Citrobact... [more]
GPMB_SALTY2.547e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALSV2.547e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALPB2.547e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALPA2.547e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALNS2.547e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
GPMB_SALHS2.547e-1435.26Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YK02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304760 ID=DY304760; Name=DY304760; organism=Citrus clementina; type=EST; length=921bp
TTGCGCCATCTCTGCTGAACCACAGCCATCTTCTTCATCACAGGCCCTAC
TTCAGCTTCACCGTCCGATCATCATCATCATCATCGACCGTCCAAGAAGT
CGAGGAGTCGTCGTCATCATCAAAGTCGTCGAAATCAACGGCTGATGCCG
GAGAGTTGAGCTCGGAACTCTACGTTTCGCCGCCGTTCCCGCAGATTCGG
GCGGCGAAGAGAGTGGTGTTGGTGAGGCACGGGCAGAGCACGTGGAATGC
GGAGGGAAGAATCCAGGGGAGCTCTGATTTCTCCGTTTTGACCAAGAAAG
GCGAGGCTCAGGCTGAGACCTCCAGGCAGATGCTCTTCGATGAGTCCTTT
GATGTTTGCTTCTCTAGCCCCTTGATTCGATCAAAGAGAACGGCAGAAAT
CATATGGGGCAATCGAAAGGAGGAGATTTTGACCGACTATGACCTGCGAG
AAATTGACCTTTATTCTTTCCAGGGTCTTCTGAAGCACGAGGGAAAAGCA
AAATTTGGTCCAGCTTATCATCAATGGCAGGTAAATCCCGCAAATTTCAG
CATTGATGGTCACTATCCAGTTAGAGAGTTGTGGGCAAGAGCCAGAAACT
GCTGGACTAAAATCCTAGCCCATGAAAGCAAGTCGGTTCTTGTGGTTGCT
CATAATGCTGTTAATCAGGCTCTTGTTGCCACGGCGATCGGACTAGGAAC
TGGGTTTTTCAGGATCTTACTTCAGAGCAATTGTGGTGTGAGTGTGTTGG
ATTTCACTCCCTCAGTTGATGGAGGGTCCCCACACATTTGTCTCAATCGT
CTAAATCAGACACCAAATTCACCTGTTGCTGCTGGAAGTTCTGGGGGCAA
AAAAGCCAGTAAACGGATTATACCTGTCTTGTTATGGATCTTCCCAGGGG
TGATTCGAAGGCTAGTGGTGG
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