DY304762

Overview
NameDY304762
Unique NameDY304762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304762 vs. ExPASy Swiss-Prot
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 6.948e-103
Identity = 185/294 (62.93%), Postives = 223/294 (75.85%), Query Frame = 2
Query:    2 ADDYYGFVMAAGKS-GSCKMLEPVXXXXXXXXXXERNRGKLAGSTSTAEA-MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVSVDGILYFMRSNPEGIVSYNMGYRGLETVHNPAPLHLNDHPLAEWG 877
            ADD    VMA GK  G  KMLE V          ER +GK           M+QEIW+EFP+DL+E V++RLP+ATFF+FR+VC+KWN+L+ S SFS+   ++PQ IPWFYTITHENVNSG +YDPSLKKWHHP I +LP K I+LP+ASAGGLVCFLDIGHRNFYV NPLT+SF+ELPARS KVWSRVAVGMTLNGNSTS GYK+LWVGC+GEYE+YDSL N WT+ G++PSNIKLP+ LNF+SQ V++   LYFM ++PEGI+SY+M     +    P P  L+DH LA  G
Sbjct:   62 ADDCCDIVMAGGKRPGIFKMLETVKPPVKRTRK-ERTQGKSCTEVDEISGNMDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHRNFYVSNPLTKSFRELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCEGEYEVYDSLSNVWTKRGTIPSNIKLPVLLNFKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIPGPPDLSDHTLAACG 354          
BLAST of DY304762 vs. ExPASy Swiss-Prot
Match: FBX13_ARATH (F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.367e-18
Identity = 71/247 (28.74%), Postives = 120/247 (48.58%), Query Frame = 2
Query:  107 NRGKLAGSTSTAEAMEQEIW---KEFP-----EDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSL--PTKMIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRV-AVGMTLNGNSTSSGYKILWVGCDGE-----YEIYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVSVDGILYFMRSNPEGIVSYN 799
            N G   G   + +  E  +     EFP     +D+ E V++ LP + FFR  SVC++W S   S SF   C+Q+P   PWF+ I +++ +S  ++D +   W +          +   +PVAS+GGL+C+      +F + NPLT S +++P++       + AV MT     T S Y ++ +   GE     ++IY+S  +SW++   + S      SL+      S  G +YF+      +V+ N
Sbjct:  101 NMGFSTGKRKSRDEEEDRVSFFASEFPMDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDNDSNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSISGDFLLRNPLTGSSRDIPSQDNNNNKPLQAVAMTTT-TVTPSSYTLVTI--SGEIPNLSFKIYESNADSWSKDQELESVKNNDSSLHDDYDTDS--GTVYFLSKQGNVVVASN 342          
BLAST of DY304762 vs. ExPASy Swiss-Prot
Match: FK111_ARATH (F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.996e-18
Identity = 75/248 (30.24%), Postives = 110/248 (44.35%), Query Frame = 2
Query:  149 MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTI--THENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRNF--YVCNPLTQSFKELPA-------RSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVS-VDGILYFMRSNPEGIVSYNMGYRGLETVHNPAPLHLND 856
            ME  IW   PEDL   ++AR+P    FR RSVC+KWN +L+ +SF +  + V    P   T       +   +++   LK W+    + LP     L V S+GGLVCF  +    F   VCNPL QS++ LP+       + + V  R      +   S   G K L        E+YDS  + W+    MP       ++N  S  ++  D  LY    +P G++ Y +     E +    P  L D
Sbjct:   99 MEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWL-VGSSGGLVCFSGLDGLTFRTLVCNPLMQSWRTLPSMHYNQQRQLIMVVDRSDKSFKVIATSDIYGDKSL------PTEVYDSKTDKWSLHQIMP-------AVNLCSSKMAYCDSRLYLETLSPLGLMMYRLDSGQWEHIPAKFPRSLLD 332          
BLAST of DY304762 vs. ExPASy Swiss-Prot
Match: FBK77_ARATH (F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.128e-15
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 2
Query:  176 PEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCA--QVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRN-FYVCNPLTQSFKEL 529
            P+DL E +++ LPIA+ FR  +VC++WN ++ S  F  + +   V Q  PW++  T  +  SG  YDP ++KW+   +  + T      VAS+ GLVCF+D   RN  YV NP+T+ ++ L
Sbjct:   44 PDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQR-PWYFMFTTTDDPSGYAYDPIIRKWYSFDLPCIETSNWF--VASSCGLVCFMDNDCRNKIYVSNPITKQWRTL 161          
BLAST of DY304762 vs. ExPASy Swiss-Prot
Match: UFO_ARATH (Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.995e-13
Identity = 63/252 (25.00%), Postives = 114/252 (45.24%), Query Frame = 2
Query:  131 TSTAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQ-VPQGIPWFYTITHENVNS-----------------GAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFL--DIGHRNFYVCNPLTQSFKELPARS-VKVWSRV-------AVGMTLNGNSTSSGYKILWVGCDGEYEIYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVSVDGILYFMRSNPEGIVSYNM 802
            +S+ + M+  IW + P  L + VIA LP   FFR R VC+++ SLL S++F +   Q +P     F    H+ + S                 G ++DP+  +W+  + + +P+     P  S+GGLV ++  + G +   +CNPL  S  +LP  S  +++  +       ++ +T+ G+   S Y +  +  +  +       + W    S+P    L        + V V G  Y M  +P  ++SY +
Sbjct:   36 SSSGQWMDGRIWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCFLFFKHKTLKSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAYIPSG--FYPSGSSGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLISPYAVKNLSSESFHVDAGGFFSLWAMTSSLPRLCSLE-----SGKMVYVQGKFYCMNYSPFSVLSYEV 280          
BLAST of DY304762 vs. ExPASy Swiss-Prot
Match: FK119_ARATH (F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.146e-11
Identity = 67/235 (28.51%), Postives = 105/235 (44.68%), Query Frame = 2
Query:  134 STAEAMEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSF-SQHCAQVPQGIPWFYTITH-ENVNSGAMYDPSLKKW-HHPTISSLPTKMIILPVASAGGLVCF--LDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTLNGNSTSSGYKILWVGCDGEYE-------IYDSLRNSWTRPGSMPSNIKLPLSLNFRSQAVSVDGILYFMRSNPEGIVSYNM 802
            S+   ++  IW   P  L E +++ LP  T    RS+ +   SL+ S SF S H   +P     F  ++H ++ NS  +++P+L  W   P   SL        ++S+ GL+CF        +  + NPLT+S     +RS+K+         L+  ++  GYKI  + C            +YDS   SW + G     +   L   F    V  +G LYF RS P  IVS ++
Sbjct:   38 SSPTNLDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISDHSFSLPS----FLLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLSIFNPLTRS-----SRSIKLPCYPFPFELLSLVTSPKGYKIFTL-CSSSSAASSRSVCLYDSGDRSWRKFG----GVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDL 258          
The following BLAST results are available for this feature:
BLAST of DY304762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FBX6_ARATH6.948e-10362.93F-box only protein 6 OS=Arabidopsis thaliana GN=FB... [more]
FBX13_ARATH2.367e-1828.74F-box only protein 13 OS=Arabidopsis thaliana GN=F... [more]
FK111_ARATH8.996e-1830.24F-box/kelch-repeat protein At5g15710 OS=Arabidopsi... [more]
FBK77_ARATH7.128e-1538.02F-box/kelch-repeat protein At3g61590 OS=Arabidopsi... [more]
UFO_ARATH2.995e-1325.00Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thali... [more]
FK119_ARATH2.146e-1128.51F-box/kelch-repeat protein At5g43190 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YK04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304762 ID=DY304762; Name=DY304762; organism=Citrus clementina; type=EST; length=955bp
TGCGGATGATTATTACGGTTTTGTGATGGCAGCTGGAAAATCTGGAAGCT
GTAAGATGTTGGAGCCTGTCAAACCTCCTCCTTCTAAGAGATCTCGAAAG
GAGCGGAACCGAGGAAAATTGGCTGGATCCACCAGTACAGCTGAGGCTAT
GGAACAAGAAATTTGGAAAGAGTTCCCAGAAGACCTTTATGAAGCTGTCA
TTGCACGACTTCCTATTGCCACCTTCTTTCGCTTCCGTTCAGTTTGCCAG
AAATGGAATTCCTTACTGAAATCACATAGTTTCTCTCAGCATTGTGCCCA
AGTCCCGCAAGGAATTCCCTGGTTTTATACCATTACTCATGAAAATGTGA
ATTCTGGAGCCATGTATGATCCTTCCCTAAAGAAATGGCACCATCCTACT
ATATCTTCTCTGCCTACAAAGATGATCATCTTGCCAGTTGCTTCGGCTGG
GGGTCTAGTTTGCTTTCTTGACATTGGTCATCGGAACTTCTATGTATGCA
ACCCTTTAACTCAATCATTCAAAGAATTGCCAGCTAGGTCAGTTAAGGTC
TGGTCCCGTGTTGCTGTGGGGATGACTTTGAATGGAAATTCAACTAGTAG
TGGTTACAAGATTTTATGGGTCGGATGTGATGGCGAGTATGAAATCTATG
ACTCGCTAAGGAACTCTTGGACACGACCTGGAAGCATGCCCTCAAACATA
AAGCTGCCACTATCATTGAACTTCCGTTCACAAGCAGTCTCAGTTGACGG
CATACTTTATTTCATGCGTTCAAACCCTGAAGGGATTGTGTCCTACAATA
TGGGTTACCGGGGTTTGGAAACCGTCCATAACCCAGCCCCACTGCATTTG
AACGACCACCCACTCGCTGAGTGGGGGGGGGCGGGATATGCTCCTTGGGC
TTGCTGAAAAAAAAGGGCTTGCCCCAGGTGTTGTGCATATGGGGAGCTGC
CAAAA
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