DY304776

Overview
NameDY304776
Unique NameDY304776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length932
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.009e-58
Identity = 115/203 (56.65%), Postives = 151/203 (74.38%), Query Frame = 3
Query:  150 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRNCGDDP*EYNPPTTKVVDENVISQIPGTLSRDK 758
            ++LL R  TVHQFMGGG+ AD+LLW+RR +S GVI+++TVAWLIFE SGLPFLSV SDVLL++I++            +Q            MVN+AAASFR+K+N+LL+MAHD+TVG DFRLFF+VV  LWLLSAIGSY S  TL YIGT+LS+T+PALYS+++++VD+ CG      +    K+VDENVIS++  +LS+DK
Sbjct:   23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLS-HHYKIVDENVISRLSWSLSKDK 224          
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.277e-25
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  153 KLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 644
            KL NR  T+H+ +GGG  ADV+LW+++ VS G++ V   +W++FE       ++ S VLLLL+ ++           +             M   A+   R+ +N LL ++HDI + +D  L+ +V   L+LLS IGS   F TL +   L+ +TVPA Y R+E
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYE 170          
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.729e-24
Identity = 55/169 (32.54%), Postives = 91/169 (53.85%), Query Frame = 3
Query:  150 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVD 656
            ++L  R   +H+  GGG+ AD+ LW+ ++VS GV+  ATV+W++FE      L++   + +L + ++           K             +V   A+  R++IN    +  DI  G+D + F  V+A LW+LS +GS  +F TL YI T+L  T+P LY ++E +VD
Sbjct:   46 YRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVD 214          
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.376e-23
Identity = 62/203 (30.54%), Postives = 103/203 (50.74%), Query Frame = 3
Query:  150 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRNCGDDP*EYNPPTTKVVDENVISQIPGTLSRDK 758
            ++L  R   VH+ +GGG+ AD+ +WK +++S GV   ATVAW++FE      L++   V+++ + ++           K              +   A+  R++IN  +    +I  G+D + F   +A LW+LS +G  +SF TLAYI  +L  TVP  Y ++E +VD + G+           V+D  V S+IP    +DK
Sbjct:   67 YRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVD-SYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDK 268          
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.376e-23
Identity = 63/204 (30.88%), Postives = 104/204 (50.98%), Query Frame = 3
Query:  150 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRNCGDDP*EYNPPTTKVVDENVISQIP-GTLSRDK 758
            ++L  R   VH+ +GGG+ AD+ +WK +++S GV+  AT AW++FE      L++   V+++++ ++           K              +   A+  R++IN       +I  G+D + F   +A LW+LS +G  F+F TLAYI  +L  TVP  Y ++E +VD   G+           V+DE V+S+IP G L   K
Sbjct:   71 YRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD-PLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKK 273          
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.521e-22
Identity = 61/195 (31.28%), Postives = 99/195 (50.77%), Query Frame = 3
Query:  174 TVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRNCGDDP*EYNPPTTKVVDENVISQIPGTLSRDK 758
            +VHQ +G G  AD+LLW+ R  +  +++ +T  W +FER+G   LS  S+VLLLL+ +            +               N AA   RV INY+L +A DIT+ ++     QV   LW +S +G+  +  TL YIG LLS++ P +Y +++  +D             T+K V  N+  + P  ++++K
Sbjct:   12 SVHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNS--------TSKFV-RNISRKFPLPINKEK 197          
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.389e-22
Identity = 64/208 (30.77%), Postives = 102/208 (49.04%), Query Frame = 3
Query:  150 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRNCGDDP*EYNPPTTKVVDE----NVISQIP-GTLSRDK 758
            ++L  R   VH+ +GGG+ AD+ LW+ ++VS GV+   T +W++FE      L+      +  +  +           K              +    +  R++IN  L +  +I  GKD + F  V+A LW+LS IGS ++F TL Y  T+L  T+P LY ++E +VD   G+           V+DE     VIS+IP G L++ K
Sbjct:   50 YRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDA-YGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256          
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.090e-20
Identity = 59/196 (30.10%), Postives = 97/196 (49.49%), Query Frame = 3
Query:  150 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRNCGDDP*EYNPPTTKVVDENVISQIP 737
            +++  R   VH+ +GGG+ ADV LW+ +++S  V+ VAT  W++FE      LS+   + +L +  +           K                  A+S R ++N   ++   I +G+D + F  VV  LW++S +G++F+F TL YI  ++  TVP LY + E +VD        E       V DE V+S+IP
Sbjct:   50 YRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYV-VFDEKVLSKIP 244          
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.860e-20
Identity = 57/196 (29.08%), Postives = 97/196 (49.49%), Query Frame = 3
Query:  150 FKLLNRHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRNCGDDP*EYNPPTTKVVDENVISQIP 737
            ++L  R   VH+ +GGG  ADV LW+ +++S  V+ VAT  W++FE     FLS+   +L+  +  +           K                   ++ R ++N   ++   I +G+D + F  VV  LW++S +G++F+F TL YI  ++  TVP LY + E +VD    +   +       V DE V+S++P
Sbjct:   50 YRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVD-PVAEKTLKELKKHYMVFDEKVLSKLP 244          
BLAST of DY304776 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.982e-19
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  165 RHGTVHQFMGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMXXXXXXXXXXXKQXXXXXXXXXXXXMVNNAAASFRV-KINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 644
            R  +++  +GGGR AD++ WK ++ S  ++ V T+ W +FE    PF++    +LLL I +             Q             ++ +   F   KIN+ ++  +DI+ GKDFRL F  V  LW+LS +G+YFS  TL YI  +   T+P LY ++E
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGS---SQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYE 175          
The following BLAST results are available for this feature:
BLAST of DY304776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLP_ARATH1.009e-5856.65Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH4.277e-2534.76Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLC_ARATH4.729e-2432.54Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH1.376e-2330.54Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH1.376e-2330.88Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLK_ARATH1.521e-2231.28Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLD_ARATH3.389e-2230.77Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.090e-2030.10Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.860e-2029.08Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLN_ARATH5.982e-1932.92Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YK20RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304776 ID=DY304776; Name=DY304776; organism=Citrus clementina; type=EST; length=932bp
ATTTTGATTGTCGTTTACATTGGCCGCTAAATTTCCGGCGTTGATTGATG
GATAATTCGGCAGATTCGTGCGATATAGTCGATCGAGATGGAGACGCAGC
TGCCACCAGTTCCTCATCGACATCCGCCCCCGCCGCCGGCGCCGGAGGAT
TTAAGCTTTTAAATCGGCACGGAACAGTTCACCAGTTCATGGGCGGCGGT
AGAACTGCTGATGTGCTGTTATGGAAACGACGCCGTGTTTCTTTTGGTGT
GATTGTGGTTGCTACCGTTGCATGGCTGATATTTGAGCGGTCTGGGTTAC
CTTTCTTGTCTGTTTGTTCGGATGTTTTGCTGTTGCTGATCGTTTTGATG
TTCTTTCGTGCCAATTTTGCTGCTTTTAGAAATAAACAACTAGAGTCATT
ACCTGAGTTGGAGGTATCGGAGGAAATGGTTAATAATGCTGCAGCATCAT
TTCGTGTTAAAATAAACTATCTGCTCCTTATGGCTCACGACATCACTGTT
GGCAAGGATTTTAGACTCTTTTTCCAGGTGGTGGCCTATCTTTGGCTCCT
GTCTGCCATTGGTAGCTACTTCTCATTCTTCACTCTAGCCTATATCGGAA
CTCTCTTATCCATTACAGTTCCTGCATTGTACAGCAGATTTGAAGCACGT
GTGGATAGAAATTGCGGGGATGATCCATAAGAGTATAATCCTCCCACTAC
AAAGGTAGTGGACGAAAATGTTATTAGTCAAATTCCAGGGACTTTATCCA
GGGACAAAGTTCCCTAACTTTGAAAGTTTTTCTAACCAAATGGAAGTTGA
ATAAAAAAGGAAAACCAGAACCCTAACGGGTATGGGTGAATGGCCCCCCA
AATTTGGGAGCATCCAAATTTGAGCCGAAATTGCCAAAGTTTTCCCTTCC
CCCTGGGAAGCCCCACCTATTTTGGAGGTTTC
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