DY304778

Overview
NameDY304778
Unique NameDY304778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M_DICDI (AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.679e-48
Identity = 97/216 (44.91%), Postives = 141/216 (65.28%), Query Frame = 1
Query:  160 SAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            SA++ +N +G+VLI+R+YRDD+   + +AFR  ++ ++E  + PV+ IG  SF Y++                   F+ + + V +FKSYF    DED+IRNNFVL+YELLDEI+DFGYPQN S ++LKLYITQ   +     K     +   T+Q TG   WR   + YK+NE+++D+VESVN LMS++G++L  DV+G++ MKCFL GMPE +F
Sbjct:    3 SALFLMNGKGEVLISRIYRDDISRGVANAFRLEVIGSQETRS-PVKLIGSTSFMYIKVGNIYIVGVSRQNVNACMVFEVLHQLVDIFKSYFDN-LDEDSIRNNFVLVYELLDEILDFGYPQNCSTDVLKLYITQGQGKLKSLDKLKQDKISKITIQATGTTPWRTPDIKYKRNELYIDVVESVNLLMSAEGNILRADVSGQVMMKCFLSGMPECKF 216          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M_CAEEL (AP-2 complex subunit mu OS=Caenorhabditis elegans GN=dpy-23 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.268e-47
Identity = 96/215 (44.65%), Postives = 136/215 (63.26%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKP-TDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDDV  N VDAFR +++  ++    PV  +   SFF+++                   F+F+       +SYFG   +E+ ++NNFVLIYELLDEI+DFGYPQN  P +LK +ITQ+GVR+  +  P T       T QVTG +GWRREG+ Y++NE+FLD++E VN LM+ +G VL   V GK+ MK +L GMPE +F
Sbjct:    5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFG-KLNEENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKF 218          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M1_XENTR (AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.962e-47
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M1_XENLA (AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.962e-47
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M1_RAT (AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.962e-47
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M1_MOUSE (AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.962e-47
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M1_MACFA (AP-2 complex subunit mu-1 OS=Macaca fascicularis GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.962e-47
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M1_HUMAN (AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.962e-47
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2M1_BOVIN (AP-2 complex subunit mu OS=Bos taurus GN=AP2M1 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.962e-47
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
BLAST of DY304778 vs. ExPASy Swiss-Prot
Match: AP2MB_DANRE (AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m1b PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.052e-47
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 1
Query:  166 IYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNPLMSSKGSVLPCDVTGKIPMKCFLPGMPEFEF 807
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++                   F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ESVN LMS +G VL   V+G++ MK +L GMPE +F
Sbjct:    5 LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHLTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214          
The following BLAST results are available for this feature:
BLAST of DY304778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AP2M_DICDI2.679e-4844.91AP-2 complex subunit mu OS=Dictyostelium discoideu... [more]
AP2M_CAEEL2.268e-4744.65AP-2 complex subunit mu OS=Caenorhabditis elegans ... [more]
AP2M1_XENTR2.962e-4744.39AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN... [more]
AP2M1_XENLA2.962e-4744.39AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2... [more]
AP2M1_RAT2.962e-4744.39AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap... [more]
AP2M1_MOUSE2.962e-4744.39AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 P... [more]
AP2M1_MACFA2.962e-4744.39AP-2 complex subunit mu-1 OS=Macaca fascicularis G... [more]
AP2M1_HUMAN2.962e-4744.39AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 P... [more]
AP2M1_BOVIN2.962e-4744.39AP-2 complex subunit mu OS=Bos taurus GN=AP2M1 PE=... [more]
AP2MB_DANRE5.052e-4744.39AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YK22RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304778 ID=DY304778; Name=DY304778; organism=Citrus clementina; type=EST; length=911bp
ACGAGCTATTTGAATTTCTAAACAAACTCTCATCGTCCTCTTCCCCCAAT
TCAAATCCCTGCCACCACCGTCTTTTCTTTTTAAAATTCCCCAGATCTGG
GACCCTCACCTTGAGTTATCACGGTTGATCCCACTGGATCGGAGATGCCG
GTGGCTGCTTCTGCTATCTACTTCTTAAATCTTCGTGGCGATGTCCTCAT
CAATCGTCTCTATCGCGACGATGTCGGGGGAAATATGGTGGATGCATTTC
GAACGCATATTATGCAAACAAAAGAATTAGGGACGTGTCCGGTGCGCCAG
ATCGGAGGCTGCTCTTTCTTTTACATGAGAATCAGCAATGTTTACATTGT
TATTGTTGTTAGCAGCAACGCTAATGTCGCTTGCGCATTTAAGTTTGTTG
TCGAGGCAGTTGCTCTGTTTAAATCTTATTTTGGTGGTGCTTTCGATGAA
GATGCTATTCGGAATAATTTTGTTCTGATTTATGAGCTGTTGGATGAAAT
CATGGACTTTGGTTACCCGCAGAATCTCTCTCCTGAGATTTTAAAGCTTT
ATATCACTCAAGAAGGGGTGCGGTCACCATTTTCATCCAAGCCTACAGAT
AGACCTGTCCCTAATGCAACTTTACAAGTTACGGGTGCAGTTGGTTGGCG
TAGAGAGGGACTTGTTTACAAGAAAAATGAGGTCTTTCTTGATATTGTGG
AAAGTGTAAATCCTCTGATGTCTTCAAAAGGTAGTGTTCTACCTTGTGAT
GTAACGGGGAAGATTCCTATGAAATGCTTCCTCCCCGGAATGCCTGAATT
TGAATTTAGGTTTAAATGACCAAATTGGCCTTGAAAAAGGAATCCCACCC
TAAATCCCCTCCTAATAAAAATTGGAAAAACAATTGAACCTTAAGGAAGT
TTCTTCCCACC
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