DY304781

Overview
NameDY304781
Unique NameDY304781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.685e-21
Identity = 63/166 (37.95%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  241 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCTVPDSRAAIFKDKNLGLMEKNQLMK 714
            FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P S   +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS    Y EF+++D   M   + ++ +VP SR+ +F  K L ++EK  LMK
Sbjct:    9 FDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKSNICRYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMK 172          
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.143e-17
Identity = 56/167 (33.53%), Postives = 94/167 (56.29%), Query Frame = 1
Query:  244 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ---HPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSID--ATFMLDADAKLCTVPDSRAAIFKDKNLGLMEKNQLMKIFKLV 729
            D+++ GTG+ ESV++AA +  G +VLH+D N +YG   ++L++  +  ++N  +  S  C    Y + ++  Y S L+       R+F +D+S P++LF     + +++KS    YLEF+S+    T+  D   KL    +++  IF D+NL LM K  LMK  K V
Sbjct:   48 DVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQIKRWVNEVNEGSVSC----YKNAKL--YVSTLIGSGKYSSRDFGIDLS-PKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKL---TNTKQEIFTDQNLPLMTKRNLMKFIKFV 204          
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: RAEP_CANAL (Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.011e-15
Identity = 52/164 (31.71%), Postives = 90/164 (54.88%), Query Frame = 1
Query:  244 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH-PRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCTV-PDSRAAIFKDKNLGLMEKNQLMKIFKLV 729
            D+++IGTGL ES+++AA S  G  VLH+D N +YG   S+L+I  L  +    ++         + D +I     +  +Q+  +++ +D++ P+++FC    + L++KS    YLEF+S+    + + D     V   ++  IF DK+L LM K  LMK  K +
Sbjct:    5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKI----HQFQDAQIYIPGGKQSNQYTSKDYGIDLT-PKIMFCQSDLLSLLIKSRVYRYLEFQSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTKRYLMKFLKFL 163          
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: YG63_SCHPO (Uncharacterized Rab geranylgeranyltransferase C15C4.03 OS=Schizosaccharomyces pombe GN=SPBC15C4.03 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 51/170 (30.00%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  238 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN--SHSTPSSVCPDPLYSDVEISNYASRLLSQH--PRNFNLDVS-GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCTVPDSRAAIFKDKNLGLMEKNQLMKIFKLVS 732
            ++D+I++GT L  S++SAA S + + VLH+D N FYG    SL++ DL            S +  D       +  +  + L++   P+N    +   P+ +F +   V L+ ++    YL  K   +  +L ++ +   VP+SRA IF +KNL L  K  +M+  K VS
Sbjct:    6 SYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDSSQILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKYLLLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVS 175          
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12
Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  241 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCTVPDSRAAIFKDKNLGLMEKNQLMKIFKLVS 732
            +D+IV+GTGL E ++S   S +GK VLH+D NP+YG    S SI  L      +  P S  P+ +                  R++N+D+  P+ L      V ++L +  + YL+FK  + +F+     K+  VP + A       +GL EK +  K    V+
Sbjct:    5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG--ESASITPLEDLYKRYKIPGSP-PESM---------------GRGRDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA 148          
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 47/164 (28.66%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  241 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCTVPDSRAAIFKDKNLGLMEKNQLMKIFKLVS 732
            +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   +S+             TP     + LY   ++       + +  R++N+D+  P+ L      V ++L +  + Y++FK I+ +F+     K+  VP + A       +GL EK +  K    V+
Sbjct:    5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASI-------------TPL----EDLYKRFKLPGQPPASMGR-GRDWNVDLI-PKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA 148          
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 47/164 (28.66%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  241 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCTVPDSRAAIFKDKNLGLMEKNQLMKIFKLVS 732
            +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   +S+             TP     + LY   ++       + +  R++N+D+  P+ L      V ++L +  + Y++FK I+ +F+     K+  VP + A       +GL EK +  K    V+
Sbjct:    5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASI-------------TPL----EDLYKRFKLPGQPPASMGR-GRDWNVDLI-PKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA 148          
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 47/164 (28.66%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  241 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCTVPDSRAAIFKDKNLGLMEKNQLMKIFKLVS 732
            +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP     + LY   +I       + +  R++N+D+  P+ L      V ++L +  + YL+FK ++ +F+     K+  VP +         +G+ EK +  K    V+
Sbjct:    5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL----EELYKRFQILEGPPESMGR-GRDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA 148          
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 49/164 (29.88%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  241 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCTVPDSRAAIFKDKNLGLMEKNQLMKIFKLVS 732
            +D+IV+GTGL E ++S   S +GK VLH+D NP+YG    S SI  L         P S  P+ +                  R++N+D+  P+ L      V ++L +  + YL+FK  + +F+     K+  VP + A       +GL EK +  K    V+
Sbjct:    5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG--ESASITPLEDLYKRFKIPGSP-PESM---------------GRGRDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA 148          
BLAST of DY304781 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 46/164 (28.05%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  241 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCTVPDSRAAIFKDKNLGLMEKNQLMKIFKLVS 732
            +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP     + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK ++ +F+     K+  VP +         +G+ EK +  K    V+
Sbjct:    5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL----EELYKRFQLLEGPPEAMGR-GRDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA 148          
The following BLAST results are available for this feature:
BLAST of DY304781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RABEP_DROME4.685e-2137.95Rab proteins geranylgeranyltransferase component A... [more]
RAEP_YEAST3.143e-1733.53Rab proteins geranylgeranyltransferase component A... [more]
RAEP_CANAL1.011e-1531.71Rab proteins geranylgeranyltransferase component A... [more]
YG63_SCHPO4.696e-1330.00Uncharacterized Rab geranylgeranyltransferase C15C... [more]
GDIB_PONAB3.044e-1229.88Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_RAT5.192e-1228.66Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE5.192e-1228.66Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIA_MOUSE5.192e-1228.66Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIB_HUMAN6.781e-1229.88Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIA_CANFA6.781e-1228.05Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YL03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304781 ID=DY304781; Name=DY304781; organism=Citrus clementina; type=EST; length=901bp
AAGGTTTTATCATTTGAAGGAGTTGTGTCATCTGCTCAGATCAACTAACT
CATTTGAAGCTGAAGCTGGTCGTCGTATTCTACTCAGCAATCAGTATCGT
ATTGAATCACTTTCTCTCTCTCACACATCAATAATCATAGTAGTATTTAT
TTGCCTGTCAATTGGCGTTCAGTCATGACTGGGAACGAGAGTGAGAGTGA
ACTCCCAGTGCCACCATACCCTCCAATCGAGCCAACCGCATTCGACCTCA
TTGTCATTGGAACTGGCCTGCCAGAATCTGTAATTTCGGCCGCAGCATCC
GCCTCTGGCAAATCCGTCCTCCACCTCGACCCGAACCCATTTTACGGGTC
CCACTTCTCATCTCTCTCCATTGCTGACCTGACTCACTTCCTTAACTCCC
ATTCTACACCTTCTTCTGTCTGCCCTGATCCTCTTTACTCTGATGTTGAG
ATATCCAATTATGCTTCTCGACTTCTCAGCCAACACCCTAGAAACTTTAA
TTTAGATGTATCCGGACCGAGAGTTTTATTTTGTGCTGATCATGCTGTAG
ACTTGATGTTAAAGTCTGGGGCAAGTCACTATCTTGAATTCAAAAGTATT
GATGCAACTTTTATGCTGGATGCTGATGCCAAACTGTGTACTGTGCCCGA
TTCCCGTGCTGCGATTTTTAAGGATAAAAATTTGGGTTTGATGGAAAAAA
ATCAGTTGATGAAAATCTTTAAACTTGTTTCGGGAAACTTGAGCCCTATA
TGAGACCGAAAAAAAAGGATGTGAAAATCCCCAAGGAAAAATTGGGACCC
GTCCTTTTTGCTGAATTTTTCGAACTAAAATGACATTGTCCCACAAAGAT
TAAAATCAATGGTCCCAAATGCCATAATCCATGGGGCAAATTATTTTCCC
A
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