DY304784

Overview
NameDY304784
Unique NameDY304784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304784 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.032e-20
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 1 
Query:  469 EATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTEALRVQKEIPRRLHEQLEVLRRFPLPIETPGK*LPSILEK 816
            +ATPKTIMR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S      A + D          M++++ N+         +Q E+ RRLHEQLEV R   L IE  GK + SILE+
Sbjct:   59 KATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILER 165
The following BLAST results are available for this feature:
BLAST of DY304784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APL_ARATH1.032e-2050.00Myb family transcription factor APL OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YL06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304784 ID=DY304784; Name=DY304784; organism=Citrus clementina; type=EST; length=894bp
ATCTCTCTTTCTATACTGCAGTCTGAAGCTCAATCTGAGGCTGAATCCTT
GCTGCTGAAGCTCAAAGCGCTCTCCTCCTTTAATCTTGTCTCGTCTTGCA
CTCAATCGTCTTGATTTCTATTTGAAGATACTGCATTCTTGAGTCTGTGA
TAAAAGTATTCTGCGATTTACACCCTGCCGGTGGACCGGTGGCCACCCCG
ACTTTCGGGGGGGCCGGCTCGACGGCACCAATCTCCCCGGCGACGCCTGC
TTGGTCTTAACCACCGATCCCAAGCCCCGCCTCCGCTGGACCGCTGAGCT
TCACGACCGCTTCGTCTATGCTGTCACCCAGCTCGGTGGCCCCGACAGTA
CCTGTATTTCATGGGTATGAAATGGGGACATTTCATCAGAAGCATAAGAG
GGGTCTCAACAAGAAGCATAATGTATGGTGCCACGTCGGAAATAAGGGTA
CAATTAGTTGTTTTTATAGAAGCAACACCCAAGACTATCATGAGAACGAT
GGGAGTGAAAGGCCTTACCCTTTATCATCTCAAATCACATCTTCAGAAGT
ACCGCTTGGGAAAGCAAGCGTGCAAGGAAACGACAGAGAACTCCAAGGAT
GTTTCTTGTGTTGCTGAAAGTCAGGACACTGGTTCATCCACAACATCCTC
CACCAGAATGGTAGCGCAAGATCCAAATGATGGTTACCAGGTTACTGAAG
CTTTGCGAGTACAGAAGGAAATCCCACGAAGGCTTCATGAGCAGCTGGAG
GTTCTGCGACGGTTTCCGCTCCCAATTGAAACCCCAGGCAAATAACTTCC
GTCAATACTTGAGAAAACTTGGAAGCTCCGAATGATCAGGCCCTCCTGGC
TTGCCGGGCTTTAAACCGCCTCAAAAGGACCTTCCCAACTTTCC
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