DY304787

Overview
NameDY304787
Unique NameDY304787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length992
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304787 vs. ExPASy Swiss-Prot
Match: PATD2_SOLTU (Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.741e-11
Identity = 42/166 (25.30%), Postives = 75/166 (45.18%), Query Frame = 2
Query:  284 VRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVXXXXXXXXXXXXXFTRGKDSNPMFSAEGALNFIVXXXXXXXXXXXXXXXXXCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYNFKMMDLCLATSANPT 781
            V +LSIDG G   GI+    L  LE  +++   N DA ++DYFDV+              T  +++ P  +A   + F                    +    + ++L++  G+  +   L  V I+ +D+ T  P +F+++D  +    + KM D+C +T+A PT
Sbjct:   29 VTVLSIDGGG-IKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIFNSSTGQFFGPKYDGKYLMQVLQENLGETRVHQALTEVAISSFDIKTNKPVIFTKSDLAKSPELDAKMYDICYSTAAAPT 193          
BLAST of DY304787 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.274e-11
Identity = 46/179 (25.70%), Postives = 81/179 (45.25%), Query Frame = 2
Query:  245 TKSKFNTKQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVXXXXXXXXXXXXXFTRGKDSNPMFSAEGALNFIVXXXXXXXXXXXXXXXXXCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYNFKMMDLCLATSANPT 781
            T S F T  +   V +LSIDG G   GI+ A  L  LE  ++    N DA ++DYFDV+              T  +++ P  +A+  + F                    +    + ++L++  G+  +   L  V I+ +D+ T  P +F++++  +    + KM D+C +T+A PT
Sbjct:    6 TSSTFAT--LGEMVTVLSIDGGG-IKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTGTGGLLTAMITTPNENNRPFAAAKDIIPFYFDHGPKIFEPSGFHLVEPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKTPELDAKMYDICYSTAAAPT 181          
BLAST of DY304787 vs. ExPASy Swiss-Prot
Match: PAT08_SOLTU (Patatin-08 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.617e-11
Identity = 41/166 (24.70%), Postives = 75/166 (45.18%), Query Frame = 2
Query:  284 VRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVXXXXXXXXXXXXXFTRGKDSNPMFSAEGALNFIVXXXXXXXXXXXXXXXXXCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYNFKMMDLCLATSANPT 781
            V +LSIDG G   GI+    L  LE  +++   N DA ++DYFDV+              T  +++ P  +A   + F                    +    + ++L++  G+  +   L  V I+ +D+ T  P +F++++  +    + KM D+C +T+A PT
Sbjct:   29 VTVLSIDGGG-IKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIFNSSTGQFFGPKYDGKYLMQVLQENLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPT 193          
BLAST of DY304787 vs. ExPASy Swiss-Prot
Match: PAT05_SOLTU (Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.617e-11
Identity = 45/179 (25.14%), Postives = 81/179 (45.25%), Query Frame = 2
Query:  245 TKSKFNTKQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVXXXXXXXXXXXXXFTRGKDSNPMFSAEGALNFIVXXXXXXXXXXXXXXXXXCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYNFKMMDLCLATSANPT 781
            T S F T  +   V +LSIDG G   GI+    L  LE  +++   N DA ++DYFDV+              T  +++ P  +A+  + F                    +    + ++L++  G+  +   L  V I+ +D+ T  P +F++++  +    + KM D+C +T+A PT
Sbjct:   18 TSSTFAT--LGEMVTVLSIDGGG-IKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPT 193          
BLAST of DY304787 vs. ExPASy Swiss-Prot
Match: PATA3_SOLTU (Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.642e-11
Identity = 41/166 (24.70%), Postives = 75/166 (45.18%), Query Frame = 2
Query:  284 VRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVXXXXXXXXXXXXXFTRGKDSNPMFSAEGALNFIVXXXXXXXXXXXXXXXXXCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYNFKMMDLCLATSANPT 781
            V +LSIDG G   GI+    L  LE  +++   N DA ++DYFDV+              T  +++ P  +A   + F                    +    + ++L++  G+  +   L  V I+ +D+ T  P +F++++  +    + KM D+C +T+A PT
Sbjct:   29 VTVLSIDGGG-VKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPT 193          
BLAST of DY304787 vs. ExPASy Swiss-Prot
Match: PAT03_SOLTU (Patatin-03 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.642e-11
Identity = 45/179 (25.14%), Postives = 80/179 (44.69%), Query Frame = 2
Query:  245 TKSKFNTKQVNGKVRILSIDGAGSTDGILAAKSLAHLESFIRRKSGNPDAHISDYFDVVXXXXXXXXXXXXXFTRGKDSNPMFSAEGALNFIVXXXXXXXXXXXXXXXXXCFKASRVEKLLRKTFGDLTLKDTLKPVLITCYDLSTCAPFLFSRADALEMDGYNFKMMDLCLATSANPT 781
            T S F T  +   V +LSIDG G   GI+    L  LE  +++   N DA ++DYFDV+              T  +++ P  +A+  + F                    +    + ++L++  G+  +   L  V I+ +D+ T  P +F++++       + KM D+C +T+A PT
Sbjct:   18 TSSTFAT--LGEMVTVLSIDGGG-IKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLARSPELDAKMSDICYSTAAAPT 193          
The following BLAST results are available for this feature:
BLAST of DY304787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATD2_SOLTU1.741e-1125.30Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1[more]
PT3K1_SOLTU2.274e-1125.70Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ... [more]
PAT08_SOLTU6.617e-1124.70Patatin-08 OS=Solanum tuberosum PE=2 SV=1[more]
PAT05_SOLTU6.617e-1125.14Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV... [more]
PATA3_SOLTU8.642e-1124.70Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT03_SOLTU8.642e-1125.14Patatin-03 OS=Solanum tuberosum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YL09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304787 ID=DY304787; Name=DY304787; organism=Citrus clementina; type=EST; length=992bp
ATCAATTTCCTCAATTTCACACTTTACACTTGATTACACACTCTCAAAAA
CCTTCCAACAAAAATTCAAATTTCGCAATTTTAAACTCAATTGATCTGAA
AAAGAAAAAAAAAAAAAAATGGCACTGCCAATGCTTGACTCAGCCTTGGA
CGTAGACAAGCTCAGCTACGAAATCTTCTCAATTCTTGAAAACAAGTTCC
TCTTCGGCTACGATGAACCTAATAAACTCTCTCTTCACCACCAAACCAAA
TCGAAATTCAACACCAAACAAGTCAACGGCAAAGTCAGGATCCTCTCCAT
CGACGGCGCCGGCTCCACCGACGGCATTCTCGCCGCCAAATCACTTGCCC
ACTTGGAATCCTTCATCCGCCGCAAATCAGGCAACCCAGACGCCCACATC
TCCGATTACTTCGACGTCGTTGCTGGCTCCGGCGCCGGGGGCATACTCGC
CGCTCTTCTCTTCACTCGCGGGAAAGACAGTAATCCCATGTTCTCCGCCG
AGGGAGCTCTTAACTTTATCGTGGGGAATCGCCGGAGACTGTTCCGGTCG
TCCTCCGGTGGGCTTCTCCGCCGGTGTTTTAAGGCGTCGAGGGTTGAAAA
ACTGTTGCGTAAAACGTTCGGGGACTTAACCTTGAAGGACACCTTGAAGC
CGGTTTTGATCACGTGCTACGATCTTTCCACGTGCGCGCCGTTTTTGTTT
TCCCGCGCTGATGCGTTGGAAATGGACGGCTACAATTTCAAGATGATGGA
CCTGTGTTTGGCCACGTCGGCAAACCCAACGTAAACCGGGCAGTCAAAAT
AAGTCCGTTGAACCAAAGAACAAACACCCCCCGCGTAAATGGGTGCATTA
GCAATGAACAATCCAAACGGCTCTGCAATACCCCCCCTTGTTAATTAAAA
ACCCCCAAATTTCCCTTTTTGAAACCGCCCTTTAAAATCCCTGGGGGTGT
TTTTCTACTAGAAAACCAAAAGTCCCAAATTCCTGGAACCGG
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