DY304793

Overview
NameDY304793
Unique NameDY304793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304793 vs. ExPASy Swiss-Prot
Match: KITH_ORYSJ (Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.900e-22
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 3 
Query:  315 RNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDA 452
            RN+A+IKS KD RY +DSVVTHDG K+PCWALPEL+SF+ KLG +A
Sbjct:   97 RNVALIKSDKDNRYGLDSVVTHDGTKMPCWALPELSSFQDKLGTEA 142

HSP 2 Score: 49.2914 bits (116), Expect = 1.900e-22
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:  128 GEIHVIMGPMFAGKTTALLRRIRSESDNG 214
            GEIHVI+GPMFAGKTTALLRR++ E+  G
Sbjct:   67 GEIHVIVGPMFAGKTTALLRRVQVEAGTG 95
The following BLAST results are available for this feature:
BLAST of DY304793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KITH_ORYSJ1.900e-2271.74Thymidine kinase OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YL16RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304793 ID=DY304793; Name=DY304793; organism=Citrus clementina; type=EST; length=920bp
CTCGTGACTTCGACACGACAGCGTCGTTCGCATCAGCATGGCGGCCTCCC
TTCTCAAGCCCGCAGCAGTTACCACGAATCAGGTCAATAGTGGCCGCGAC
CGTGTGGGACTGCCCCACCGTAATTCCGGGGAGATCCACGTCATCATGGG
TCCCATGTTTGCCGGAAAAACCACGGCGCTCCTCCGTCGTATCAGATCCG
AAAGCGACAATGGCAGGTTCGCCATTTTAAATTGTTAATTATATATTTTC
TTTGTGAGTTCTGAGTTGATTTTCTTTTTTCTTTTATTTTCTTTTCAATA
AATCGGTTGTGTGCAGAAATATTGCGATGATAAAATCGAGCAAGGACACG
AGATACGCGATTGACTCGGTGGTGACTCATGATGGGGCTAAGCTTCCGTG
TTGGGCTCTACCGGAACTGACGTCGTTCCGACAGAAACTCGGAGATGATG
CTTACGCGAAGGTCATTTTAAAGATTTTATATTAAAAAATTTATTCACTA
CTTTTTTTTAATTGTATTGCTGGATCTGATTAATTTTATGATTATTTGAG
TATTAAAAAAAAATTAACAAGAGTGTTTTTGCCACTCACTTGGTTATGTT
ATTGTGTTTGATTTCCCTTTAAAATTGTCTATGGAATTTTCGAATAAAAT
AGTTTTAGTTTGAGTTTAGTGATGTTCAATTCTCCGCTTATTTTATAATG
CTGGTGATTTTTTAAAACCGAATCTGAATTGGATTGTTGGTACTGGGTTA
TAAATGCCCTGTTTTTTATAATCTTCTGGGCAATTCATTATTCCTTAGAT
AGCGGTTTAAAAATCTGGATTCTCTCCGGAATTTGACATAAAAATGGATG
TTTCTCCTTGTTTTGGATGTGGACGGCTTGATGTGATTGGCTTTGACGAA
GCCCAATTTTTCAAAACCTA
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