DY304798

Overview
NameDY304798
Unique NameDY304798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304798 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.407e-30
Identity = 69/150 (46.00%), Postives = 94/150 (62.67%), Query Frame = 2
Query:  293 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXDE*ERFPGEND-SSVAKNLESTNTFPSFLWGIVGVHRKTAKWETL 739
            EPS+ VRETAAEQLEERQS WAYS+P++ LD+LWNL FV +  AVL +S +EKP +PLR+ +VGY +QC  H+ CV +E++RRRR                        +     + S+ AK+LES NT  SF+W I+G +  +A  +TL
Sbjct:   83 EPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTL 232          
BLAST of DY304798 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.065e-28
Identity = 70/157 (44.59%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  293 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRR-RXXXXXXXXXXXXXXXXXXXXDE*E----------------RFPGENDSSVAKNLESTNTFPSFLWGIVGVH 712
            EPS+ VRE AAEQLEERQS WAYS+P++VLD +WNL FV+VA AVL +S +E P +PLR+ I+GY LQC+ H+ CV +E++RR  R                    DE E                +   EN+S  AK+LES NT  SF+W ++G +
Sbjct:   48 EPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDERYLELGQLENENNS-FAKHLESANTMISFIWWVIGFY 203          
BLAST of DY304798 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.017e-27
Identity = 70/169 (41.42%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  293 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXDE*ERFPGE--------------------NDSSVAKNLESTNTFPSFLWGIVGVHRKTAKWETL 739
            EPS+ VRE AAEQLEERQS WAYS+P++VLD++WNL FV VA A+L +S  E P +PLR+ ++GYALQC+ H+ CV +E++RR R                            E                      SSVAK+LES NT  SF+W I+G +  +A  + L
Sbjct:   74 EPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQEL 242          
The following BLAST results are available for this feature:
BLAST of DY304798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RING4_ARATH7.407e-3046.00E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
RING2_ARATH4.065e-2844.59E3 ubiquitin-protein ligase At1g63170 OS=Arabidops... [more]
RING1_ARATH2.017e-2741.42E3 ubiquitin-protein ligase At1g12760 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YL21RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304798 ID=DY304798; Name=DY304798; organism=Citrus clementina; type=EST; length=917bp
TTTCCCAATTAAGTCCCTCTTCACATCAACCCACCAAATCACCCTTATAT
TAAAACCCGAATCCAATTCTTGAAATTTGTCTCGAAACGCTAGTTGATTT
CAGTTCACTTTCAGTCGTCGAATGCGAATGAACCCCCCAGCAGACGCCGC
GGAAACGTCACCACTCTTAGCTCACTCACTCCCCGACCACCTCATTCGAA
GCCGCCGTCTACTCCGCCGTCCGCCACCTCCGTTACGGGGCGCCGCGGCG
CGACTCCTCAGACGCGCTAGCGGGAGGCGGTTGATGCTACGAGAGCCATC
GGTGCGCGTGAGGGAAACGGCGGCGGAGCAGCTGGAGGAGCGTCAAAGCT
ACTGGGCTTACTCGAGGCCCATTATAGTGCTTGATGTCCTGTGGAATTTG
GTATTTGTAATTGTTGCCTTCGCAGTGTTGGGTGTGAGTATAAACGAAAA
GCCTGAGGTGCCTCTAAGGCTCCGGATTGTTGGTTACGCTTTGCAGTGTT
TGTTTCACGTTTTTTGCGTCTCTTTGGAGTTCAAAAGAAGGCGCCGAGGG
GAAGGTGTTGTTTTTGGTGATTCCGTTTCTGGGTCCAGCAGTACTACTGT
CCCCGGTGATGAATAAGAGCGGTTTCCTGGTGAAAATGATAGCAGTGTAG
CAAAGAATTTGGAATCCACCAATACATTTCCTTCGTTTTTGTGGGGGATT
GTTGGGGTCCACCGGAAAACTGCCAAGTGGGAAACCTTAGAAAAATAGGT
TGCCCCCACCTAAATGGGCTTGGGGTTCCTTCCCTGCCTTTAGAGTTGGG
CCATGTTACGATCTCCAGTTGGGGGGGAAAGGCCCTATCTGGATATCGAG
ACAAAAAAATTTCTGCCCTGATTAAGGGGAAATCTTTTTTCCGGTGGAAC
CACCCGTGGATGGGTTC
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