DY304799
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_XENTR (60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 9.368e-81 Identity = 122/219 (55.71%), Postives = 167/219 (76.26%), Query Frame = 3 Query: 60 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHD 713 G++LCC+CGIP+ PN ANMCV+CLR +VDI+EG+ K V + C +C+ YLQPP TWI+ LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+Y+ Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++ G+DF++ ++ HA K VEF+ P R + ++L+SHD Sbjct: 13 GNILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCALESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYIVQSQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHD 230 HSP 2 Score: 52.7582 bits (125), Expect = 9.368e-81 Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 721 TTNFNYKYTFSVENNPICPEELICLPPKVAFSLGKLGSLCYLYEIT 858 T +NYK TFSVE P+C + L+CL PK+A SLG + +C +T Sbjct: 233 TNAYNYKSTFSVEIVPVCKDNLVCLSPKLAQSLGNMNQICICVRVT 278
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_XENLA (60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 1.222e-80 Identity = 123/219 (56.16%), Postives = 167/219 (76.26%), Query Frame = 3 Query: 60 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHD 713 G++LCC+CGIP+ PN ANMCVACLR++VDI+EG+ K V + C +C+ YLQPP TWI+ LES+ELLT C+K+LK NL++VRL++A FIWTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q MCD C RV+A D W A VQ+RQ V H++TF+YLEQ ILKH +R+ ++ G+DF++ ++ H K VEF+ P R + ++L+SHD Sbjct: 13 GNILCCQCGIPIPPNPANMCVACLRTQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCALESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQAQMCDDCHRVEAK-DFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHD 230 HSP 2 Score: 52.373 bits (124), Expect = 1.222e-80 Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 721 TTNFNYKYTFSVENNPICPEELICLPPKVAFSLGKLGSLCYLYEIT 858 T +NYK TFSVE P+C + L+CL PK+A SLG + +C +T Sbjct: 233 TNAYNYKSTFSVEIVPVCKDNLVCLSPKLAQSLGNMNQICICARVT 278
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_DANRE (60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 1.118e-78 Identity = 117/225 (52.00%), Postives = 169/225 (75.11%), Query Frame = 3 Query: 60 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKNHQF 731 G++LCC CG+P+ PN ANMCV+CLR++VDI+EG+ K V I C +C+ YLQPP +W++ LES+ELL C+K+LK ++++VRL++A F+WTEPHSKRIK+KL +QKEV+NGAIL+Q + VE+V Q MC+ C RV+A D W A VQ+RQ H++TF+YLEQLILKH +RI ++ +GIDF++ + HA K V+F+ P RS+ ++L+SHD ++ + Sbjct: 13 GNILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCALESRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQVFTVEFVVQGQMCEDCHRVEAK-DFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVRIKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTY 236 HSP 2 Score: 51.6026 bits (122), Expect = 1.118e-78 Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 1 Query: 721 TTNFNYKYTFSVENNPICPEELICLPPKVAFSLGKLGSLCYLYEIT 858 + +NYK TFSVE P+C + ++CL P++A SLG +G +C +T Sbjct: 233 SNTYNYKSTFSVEIVPVCKDNVVCLSPRLAQSLGNMGQVCVCVRVT 278
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_DICDI (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 5.504e-78 Identity = 117/228 (51.32%), Postives = 167/228 (73.25%), Query Frame = 3 Query: 45 VPQTV-GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKNH 725 +PQ ++LCC CG+ + N +NMCV C++S+VDITEG+ K + I C C YLQPP W A+LES+ELLT C+KR+K LN+V+LV+A ++WTEPHSKR+KVKL +QKEV AIL+Q +++E++ Q CD C + +A D W + VQLRQ V H+RTF Y+EQLILKH+A ++ + I + G+DFFF NR+HA+KFVEF+ + PV+++ +QL+S D +N+ Sbjct: 4 IPQVKQANILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQPPNHWAIAELESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQQIFIIEFIVQGQQCDKCQKFEAK-DTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNN 230 HSP 2 Score: 50.8322 bits (120), Expect = 5.504e-78 Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 1 Query: 733 NYKYTFSVENNPICPEELICLPPKVAFSLGKLGSLCYLYEIT 858 NYKYTFSVE P+ ++++CLPPK+A LG +G L + +++ Sbjct: 233 NYKYTFSVEIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVS 274
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_BOVIN (60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 1.023e-76 Identity = 118/224 (52.68%), Postives = 164/224 (73.21%), Query Frame = 3 Query: 45 VPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHD 713 V T G +LCC CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TW++ LES++LL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A VQ+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D Sbjct: 8 VKHTPGHILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVQCALESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQPQMCGDCHRVEAK-DFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQD 230 HSP 2 Score: 51.2174 bits (121), Expect = 1.023e-76 Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 721 TTNFNYKYTFSVENNPICPEELICLPPKVAFSLGKLGSLCYLYEIT 858 + +NYK TFSVE PIC + ++CL PK+A SLG + +C +T Sbjct: 233 SNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVT 278
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_MOUSE (60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 1.740e-76 Identity = 115/225 (51.11%), Postives = 167/225 (74.22%), Query Frame = 3 Query: 42 TVPQTVGSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHD 713 ++ + G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP +W++ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ + P R + ++L+S D Sbjct: 7 SIEHSPGHILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQD 230 HSP 2 Score: 51.2174 bits (121), Expect = 1.740e-76 Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 721 TTNFNYKYTFSVENNPICPEELICLPPKVAFSLGKLGSLCYLYEIT 858 + +NYK TFSVE PIC + ++CL PK+A SLG + +C +T Sbjct: 233 SNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMSQICICIRVT 278
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_HUMAN (60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 2.270e-76 Identity = 117/219 (53.42%), Postives = 163/219 (74.43%), Query Frame = 3 Query: 60 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHD 713 G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL +QKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF+YLEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQD 230 HSP 2 Score: 51.2174 bits (121), Expect = 2.270e-76 Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 721 TTNFNYKYTFSVENNPICPEELICLPPKVAFSLGKLGSLCYLYEIT 858 + +NYK TFSVE PIC + ++CL PK+A SLG + +C +T Sbjct: 233 SNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVT 278
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_PONAB (60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 6.568e-76 Identity = 117/219 (53.42%), Postives = 163/219 (74.43%), Query Frame = 3 Query: 60 GSVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLK-NLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHD 713 G +LCC+CG+P++PN AN+CVACLRS+VDI++G+ K V IS C +C Y QPP TWI+ LES+ELL C+K++K L++VRLV+A F+WTEPHSKR+KVKL VQKEV+NGAIL+Q +VV+YV Q MC C RV+A D W A +Q+RQ H++TF++LEQLILK+ +RI ++ G+DF++ ++ HA K VEF+ P R + ++L+S D Sbjct: 13 GHILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDYVVQSQMCGDCHRVEAK-DFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQD 230 HSP 2 Score: 51.2174 bits (121), Expect = 6.568e-76 Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 721 TTNFNYKYTFSVENNPICPEELICLPPKVAFSLGKLGSLCYLYEIT 858 + +NYK TFSVE PIC + ++CL PK+A SLG + +C +T Sbjct: 233 SNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVT 278
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_SCHPO (60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe GN=nmd3 PE=2 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 5.985e-71 Identity = 110/221 (49.77%), Postives = 153/221 (69.23%), Query Frame = 3 Query: 63 SVLCCKCGIPMAPNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHDPKNH 725 ++LCC+CG+P PNAA MC+ C++ DIT G+ + ++HC EC+ Y+QPP W+ A LES+EL+ C+K+L+ LN+VRLV+A FIWTEPHS+RIKVKL VQKE IL+QS+ VE+ + C C+R P W A Q+RQ V H+RTF YLEQ+ILKH A + I + GIDF+FG R+HA+K VEF+ V P+R + ++L+S D K++ Sbjct: 21 TILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAPLESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFYVNNTQCPDCARTY-TPHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSN 240 HSP 2 Score: 42.743 bits (99), Expect = 5.985e-71 Identity = 17/40 (42.50%), Postives = 27/40 (67.50%), Query Frame = 1 Query: 718 RTTNFNYKYTFSVENNPICPEELICLPPKVAFSLGKLGSL 837 ++ NYK+T+S+E PIC ++L+CLP VA + G + L Sbjct: 238 KSNTANYKFTYSIEIVPICKDDLVCLPKTVAKAHGNIAQL 277
BLAST of DY304799 vs. ExPASy Swiss-Prot
Match: NMD3_YEAST (60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae GN=NMD3 PE=1 SV=2) HSP 1 Score: 220.32 bits (560), Expect = 1.698e-61 Identity = 101/222 (45.50%), Postives = 147/222 (66.22%), Query Frame = 3 Query: 51 QTVGSVLCCKCGIPM-APNAANMCVACLRSEVDITEGLQKHVIISHCPECDCYLQPPRTWIKAQLESKELLTFCVKRLKNLNRVRLVNAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVVEYVQQDHMCDSCSRVQANPDQWVAAVQLRQHVTHRRTFFYLEQLILKHDAAARAIRITQMDQGIDFFFGNRSHAVKFVEFVGKVAPVRSRHDKQLVSHD 713 Q ++LCC CG P+ MC C++ VDIT+G+ + IS C C+ +LQPP WI+A+LES+ELL C++RLK L VRLV+A FIWTEPHS+RI++KL VQ E + I++Q++ VEY+ C C+R + W A VQ+RQ V H+RTF +LEQLILKH+A I I++ G+DFF+ ++HAVK ++F+ V P++ + ++L+S D Sbjct: 12 QNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAELESRELLAICLRRLKGLTFVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVEYIVIAMQCPDCAR-SYTTNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQD 232 HSP 2 Score: 38.1206 bits (87), Expect = 1.698e-61 Identity = 16/41 (39.02%), Postives = 27/41 (65.85%), Query Frame = 1 Query: 736 YKYTFSVENNPICPEELICLPPKVAFSLGKLGSLCYLYEIT 858 YK+++SVE PIC ++L+ LP K+A S+G + +I+ Sbjct: 240 YKFSYSVEIVPICKDDLVVLPKKLAKSMGNISQFVLCSKIS 280 The following BLAST results are available for this feature:
BLAST of DY304799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY304799 ID=DY304799; Name=DY304799; organism=Citrus clementina; type=EST; length=890bpback to top |