DY304804

Overview
NameDY304804
Unique NameDY304804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length943
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304804 vs. ExPASy Swiss-Prot
Match: RHA2A_ARATH (RING-H2 zinc finger protein RHA2a OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.484e-30
Identity = 79/182 (43.41%), Postives = 100/182 (54.95%), Query Frame = 3
Query:   84 MGLHGQXXXXXXXXXXXXXVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGP----HVGSGLASLIVLAEQLNKNRAFSXXXXXXXXXXXXXDNCCCGQGVASSAAGSNCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWFSL 617
            MGL GQ             ++L+A    +LRS L  L            ++NP  P     + SGLA++IVLA+QL+ NR FS                 CG G      GS+C+VCL  L++GE VRKL+CRHVFHK CL+GWLH  NF CPLCRS +VS++ V  T+R VG DLI  FSL
Sbjct:    1 MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTS----------KSNPNLPVDDVSIASGLANIIVLADQLSLNRLFSYR---------------CGDG---GGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQRSVGRDLISCFSL 154          
BLAST of DY304804 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 9.057e-23
Identity = 65/156 (41.67%), Postives = 79/156 (50.64%), Query Frame = 3
Query:   84 MGLHGQXXXXXXXXXXXXXVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGPHVGSGLASLIVLAEQLNKNRAFSXXXXXXXXXXXXXDNCCCGQGVASSAAGSNCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 551
            MGL GQ             +AL+A  F ++RSLL                  P+   V    ++L VLA+QLN NR FS                       S  A S+C+VCL  L+ GE VRKLDCRHVFHK CL+GWL HLNFNCPLCRSP++
Sbjct:    1 MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLF----------------PSSAPVVVVTSNLSVLADQLNLNRLFSYRY--------------------SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120          
The following BLAST results are available for this feature:
BLAST of DY304804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RHA2A_ARATH4.484e-3043.41RING-H2 zinc finger protein RHA2a OS=Arabidopsis t... [more]
RHA2B_ARATH9.057e-2341.67RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YM04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304804 ID=DY304804; Name=DY304804; organism=Citrus clementina; type=EST; length=943bp
CTCAAATCCATCCCCAAACCCACACTCACCCACCAGACCAGACCAGACCC
AGTACCCAAATTATTGAAAGAAAAAAAGCCATCATGGGGCTCCACGGCCA
GCTGATCGACTTGTCGTCCGATTCACTTCCACTCCTAATCGTCGCCCTCA
TCGCCAACTGCTTCGGCAACCTCCGCTCTCTACTCTTCAGCCTCCTCCAC
TCCGTGGGCATGACCCGAGTCGACCCGGTTCAGAATAACCCGGCCGGCCC
ACACGTCGGATCGGGTCTCGCTAGCCTCATAGTCCTCGCCGAGCAACTGA
ATAAAAACCGGGCCTTTTCTTATAAATACAACAACAACAACAATATTAAT
AAAATTAATGACAATTGTTGCTGCGGTCAGGGGGTGGCAAGTAGCGCTGC
CGGTAGTAATTGCATGGTGTGCTTGTGCACGCTAAGAGATGGCGAGCTCG
TCAGGAAGCTTGATTGCCGCCACGTGTTTCACAAGGATTGCCTTGACGGC
TGGCTTCATCATCTCAATTTTAACTGTCCGCTTTGCAGATCGCCGGTTGT
TTCCGAAGAGCGCGTCTGGAACACGCGGAGGCGAGTCGGCGGGGATTTGA
TTCAGTGGTTCTCCCTGCGTTAATGTACATCAGAAGCATCTCCACGATTG
CATATTGGTTTTGATGGTTCAATGATGCATCCGCTACCCCCCATGATTCT
CTTTGATGGTTGATGCTGGTGGTGATTTTCATTTTTAGCTATAATCTTTT
TCTTTGACCTTTTTATTTTAGAAAGTTTGTGGTAATTTCGACCATACCCT
TTTTTTCTTCCTTGCTTTCTTTTTTTTGGGTAAATAGTTTAGAATTTTTA
AGGAATTTTATTTTTTTTTTAAATATTTTTTAAAAGAATTTTTTTTGGGG
CCCTTTTGGGGGTCCTTTTTTTTGCCTTTAAATTTTTCACCCT
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