DY304813

Overview
NameDY304813
Unique NameDY304813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length965
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.426e-23
Identity = 60/172 (34.88%), Postives = 100/172 (58.14%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILN-RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWV 734
            N+F ++A+  H + I +L+ K+ K ++C+G+S +SQ L A+    R   L+ +++  Y+                +Y++ F  RS+YM + D F +  ++VP A+LALLI+    H+     + W F +YLEAV++LPQL ++Q+T   E  TAHY+FALG  R L   +W+
Sbjct:    2 NIFRISADMSHLLAIIILLLKIWKSRSCSGISARSQILFALVFTARYLDLFSTYISLYNTTMKITFLAATYA--TVYLMFFKFRSTYMRESDTFRVELLIVPAAILALLIN----HDFAPFELLWTFSIYLEAVAILPQLFLLQSTGSAEVITAHYLFALGSYRALYIFNWI 167          
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD2_CAEEL (ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.960e-21
Identity = 58/169 (34.32%), Postives = 92/169 (54.44%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXXW-VIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWV 734
            NLF   A+  H+I I VL+ K+ K ++C G+S +SQ L A+    R    F   +  +            +  +Y++    +++Y  + D+F I ++V+P  +LALLI+      I   + W F +YLEAV+++PQL ++  T   E  TAHY+FALG  RFL   +WV
Sbjct:    2 NLFRFTADVAHAIAIVVLLLKIWKSRSCEGISGRSQLLFALVFVTRYLDLFTNFFSFYNTAMKIFYLVASFGTVYLMWAKFKATYDRNNDSFRIEFLVIPSMILALLINHEF---IFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYILNWV 167          
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD2_CAEBR (ER lumen protein retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.505e-20
Identity = 54/169 (31.95%), Postives = 92/169 (54.44%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXX-WVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWV 734
            N+F + A+  H++ I +L+ K+ K ++C G+S +SQ L A+    R    F   Y ++               +Y++    +++Y  + D F I ++V+P  +LAL+I+      +   + W F +YLEAV+++PQL ++  T   E  TAHY+FALG  RFL   +WV
Sbjct:    2 NIFRITADLAHAVAIVILLLKIWKSRSCEGISGRSQILFAVTFFTRYLDLFTSFYSLYNTVMKVLFLAGSIGTVYLMWVKFKATYDRNNDTFRIEFLVIPSIILALIINHEF---MFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYIFNWV 167          
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD2_PETHY (ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.755e-20
Identity = 56/173 (32.37%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFN--LRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWV 734
            N+F +A +  H   + VL+ K+   K+CAG+SLK+QEL A+    R   ++  F+  Y+               +++ +R +  +R SY +D+D F   ++V+PC +LAL+I+   +      + W F +YLEAV++LPQL ++Q T+ ++  T  Y+F LG  R     +WV
Sbjct:    2 NIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFVTRYLDIFTDFISLYNTTMKLVFLGSSLS--IVWYMRHHKIVRRSYDKDQDTFRHLFLVLPCLLLALVINEKFT---FKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGAYRSFYILNWV 169          
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD2_ENTHI (ER lumen protein retaining receptor OS=Entamoeba histolytica GN=ERD2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.755e-20
Identity = 55/169 (32.54%), Postives = 91/169 (53.85%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXX-WVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWV 734
            NLF ++A+ VH + I  L+ K++  K C G+SL+SQ L  I    R    F   Y ++             + IY+I    R++Y +  D   ++Y++VPC VLA +    T    +  I W F ++LEAV++LPQ+ ++++T  VE   + Y+F LG+ R L   +W+
Sbjct:    4 NLFRISADLVHLLSIYFLLTKIISHKNCIGISLRSQILFFIVWVTRYLDIFYNFYSLYNTILKIVYLTTSAYTIYLISKRFRATYDKIHDTLNVWYLIVPCIVLAFIF---TEDYSITEICWTFSIFLEAVAILPQILLLRSTGEVENLNSQYIFCLGLYRALYIINWI 169          
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD21_RAT (ER lumen protein retaining receptor 1 OS=Rattus norvegicus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.274e-19
Identity = 71/226 (31.42%), Postives = 112/226 (49.56%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLPVLDSRGHLLVTLGYGLWPFVVLISEIVPPFLLTGILLLPRSKVAFGGNLIPP 896
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R   L+ +++  Y+                ++MI    +++Y  + D F + ++VVP AVLA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +V   L      L  +KV  G  L  P
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNT--CMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAVLAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGKKLSLP 211          
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD21_MOUSE (ER lumen protein retaining receptor 1 OS=Mus musculus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.664e-19
Identity = 70/226 (30.97%), Postives = 112/226 (49.56%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLPVLDSRGHLLVTLGYGLWPFVVLISEIVPPFLLTGILLLPRSKVAFGGNLIPP 896
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R   L+ +++  Y+                ++MI    +++Y  + D F + ++VVP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +V   L      L  +KV  G  L  P
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNT--CMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGKKLSLP 211          
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.173e-19
Identity = 58/189 (30.69%), Postives = 103/189 (54.50%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLPVLDSRGHLLVTLGYGL 788
            N+F  A +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ ++V  Y+                +Y++    +++Y  + D+F I +++VPCA+L+L+I+   +   +  + W F +YLE+V++LPQL ++  T   E  T+HY+FALG  R L   +WV   +    + L+ +  G+
Sbjct:    2 NIFRFAGDLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLDLFTTYVSLYN--SVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLVPCALLSLVINHEFT---VMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSHYLFALGSYRALYLLNWVYRYMVESHYDLIAIFAGV 185          
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD21_BOVIN (ER lumen protein retaining receptor 1 OS=Bos taurus GN=KDELR1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.173e-19
Identity = 69/226 (30.53%), Postives = 112/226 (49.56%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLPVLDSRGHLLVTLGYGLWPFVVLISEIVPPFLLTGILLLPRSKVAFGGNLIPP 896
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R   L+ +++  Y+                ++MI    +++Y  + D F + ++V+P A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +V   L      L  +KV  G  L  P
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNT--CMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVIPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGKKLSLP 211          
BLAST of DY304813 vs. ExPASy Swiss-Prot
Match: ERD21_HUMAN (ER lumen protein retaining receptor 1 OS=Homo sapiens GN=KDELR1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.838e-19
Identity = 71/227 (31.28%), Postives = 112/227 (49.34%), Query Frame = 3
Query:  234 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDI-HXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLPVLDSRGHLLVTLGYGLWPFVVLISEIVPPFLLTGILLLPRSKVAFGGNLIPP 896
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R   L+ +++  Y+               W+IY      +++Y  + D F + ++VVP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +V   L      L  +KV  G  L  P
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWLIYS---KFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGKKLSLP 211          
The following BLAST results are available for this feature:
BLAST of DY304813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERD22_CAEEL9.426e-2334.88Putative ER lumen protein retaining receptor C28H8... [more]
ERD2_CAEEL3.960e-2134.32ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_CAEBR1.505e-2031.95ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_PETHY9.755e-2032.37ER lumen protein retaining receptor OS=Petunia hyb... [more]
ERD2_ENTHI9.755e-2032.54ER lumen protein retaining receptor OS=Entamoeba h... [more]
ERD21_RAT1.274e-1931.42ER lumen protein retaining receptor 1 OS=Rattus no... [more]
ERD21_MOUSE1.664e-1930.97ER lumen protein retaining receptor 1 OS=Mus muscu... [more]
ERD2_DROME2.173e-1930.69ER lumen protein retaining receptor OS=Drosophila ... [more]
ERD21_BOVIN2.173e-1930.53ER lumen protein retaining receptor 1 OS=Bos tauru... [more]
ERD21_HUMAN2.838e-1931.28ER lumen protein retaining receptor 1 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YM14RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304813 ID=DY304813; Name=DY304813; organism=Citrus clementina; type=EST; length=965bp
CCCAATCGGAAACTCAATTGTCTCGCTCTCTCTAAATTACATCTCACTCT
CTCGCACTTTCTCTTAATTTCCGGTAAAATATTTTTAGACCGCTCATGAG
GGCGCCGAAGAGGCCGATCCACGCGGTTTCGACATGGGTCCGGCGACAGC
CGCCGAAAGTGAAGGCATTTTTGGCGGTGGTCTCCGGCATGGCAGCGCTG
GTTTTGCTCCGATTCATTGTACACGACCACGATAACCTCTTCGTTGCTGC
CGAGGCCGTGCACTCCATTGGAATCTCCGTGTTAATATACAAGCTCATGA
AAGAGAAAACTTGTGCTGGACTGTCACTCAAATCCCAGGAACTAACAGCT
ATTTTCTTAGCTGTGAGGCTATACTGTAGTTTTGTGATGGAATATGATAT
ACACACCCTACTGGATTTAGCTACTTTGGCTACGACCCTTTGGGTTATTT
ATATGATCCGTTTCAATCTAAGGTCTAGTTACATGGAGGACAAGGACAAC
TTTGCAATATATTATGTGGTGGTACCCTGTGCAGTATTGGCTCTGTTAAT
TCATCCATCGACTTCGCATAATATATTGAATAGGATTTTCTGGGCTTTCT
GTGTTTATCTGGAAGCTGTTTCAGTACTGCCCCAGTTGCGGGTGATGCAG
AACACAAAGATTGTTGAACCATTCACAGCCCATTATGTATTTGCGCTTGG
TGTTGCGAGGTTTTTGAGCTGTGCCCACTGGGTTCTCCCGGTTCTGGATA
GTCGTGGACACTTGCTGGTTACCCTGGGCTATGGATTATGGCCCTTCGTG
GTGCTTATCTCAGAGATTGTCCCACCTTTTCTCTTAACCGGAATTCTGTT
ACTACCAAGGTCAAAAGTGGCTTTCGGCGGAAACCTAATCCCCCCAACCT
CCCTCCGCGGGTGGTTGAATTTGCAAAAAATTGTCCGGGCATGGGTTCTT
GAACCCCTTTTTACC
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