DY304814
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 3.309e-25 Identity = 67/215 (31.16%), Postives = 119/215 (55.35%), Query Frame = 2 Query: 95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGADTNN*PEHSSFCLLRERTLF-EKITDKPSAEKKKKLFPPHGEFRKIGQL 733 P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A++A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L P + +NRGF F Y ++ A +R+++ K+ GN T+ AD P+ + + + LF + + E +K F G+ ++ +L Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE--VMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKL 373
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 7.371e-25 Identity = 65/215 (30.23%), Postives = 122/215 (56.74%), Query Frame = 2 Query: 95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGADTNN*PEHSSFCLLRERTLF-EKITDKPSAEKKKKLFPPHGEFRKIGQL 733 P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P + +NRGF F Y ++ A +R+++ K+ GN T+ AD P+ + + + LF + + + E +K F G+ ++ +L Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE--VMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL 370
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 9.627e-25 Identity = 65/215 (30.23%), Postives = 122/215 (56.74%), Query Frame = 2 Query: 95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGADTNN*PEHSSFCLLRERTLF-EKITDKPSAEKKKKLFPPHGEFRKIGQL 733 P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P + +NRGF F Y ++ A +R+++ K+ GN T+ AD P+ + + + LF + + + E +K F G+ ++ +L Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE--VMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKL 280
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 9.627e-25 Identity = 65/215 (30.23%), Postives = 122/215 (56.74%), Query Frame = 2 Query: 95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGADTNN*PEHSSFCLLRERTLF-EKITDKPSAEKKKKLFPPHGEFRKIGQL 733 P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A++A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L P + +NRGF F Y ++ A +R+++ K+ GN T+ AD P+ + + + LF + + + E +K F G+ ++ +L Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE--VMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKL 370
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: A1CF_RAT (APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 5.840e-22 Identity = 56/167 (33.53%), Postives = 100/167 (59.88%), Query Frame = 2 Query: 95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592 P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + + + ++NRGF+F Y ++ A ++R+++ +L G+ + A+ Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAE 217
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: A1CF_PONAB (APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 7.628e-22 Identity = 58/169 (34.32%), Postives = 100/169 (59.17%), Query Frame = 2 Query: 89 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592 A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + + + ++NRGF+F Y ++ A ++R+K+ +L G+ + A+ Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAE 217
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: A1CF_HUMAN (APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 7.628e-22 Identity = 57/161 (35.40%), Postives = 97/161 (60.25%), Query Frame = 2 Query: 89 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGN 568 A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + + + ++NRGF+F Y ++ A ++R+K+ +L G+ Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH 209
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: RBM46_MOUSE (Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 9.962e-22 Identity = 61/167 (36.53%), Postives = 101/167 (60.48%), Query Frame = 2 Query: 95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592 PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + + ++NRGF+F Y ++ A ++R+K+ F+L G+T + AD Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWAD 222
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: RBM46_MACFA (Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46 PE=2 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 9.962e-22 Identity = 61/167 (36.53%), Postives = 101/167 (60.48%), Query Frame = 2 Query: 95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592 PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + + ++NRGF+F Y ++ A ++R+K+ F+L G+T + AD Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWAD 222
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: RBM46_HUMAN (Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 9.962e-22 Identity = 61/167 (36.53%), Postives = 101/167 (60.48%), Query Frame = 2 Query: 95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592 PP G EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + + ++NRGF+F Y ++ A ++R+K+ F+L G+T + AD Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWAD 222 The following BLAST results are available for this feature:
BLAST of DY304814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >DY304814 ID=DY304814; Name=DY304814; organism=Citrus clementina; type=EST; length=938bpback to top |