DY304814

Overview
NameDY304814
Unique NameDY304814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.309e-25
Identity = 67/215 (31.16%), Postives = 119/215 (55.35%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGADTNN*PEHSSFCLLRERTLF-EKITDKPSAEKKKKLFPPHGEFRKIGQL 733
            P  G+EVF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F  KE A++A+    S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L   P +  +NRGF F  Y ++  A  +R+++     K+ GN  T+  AD    P+     + + + LF   +    + E  +K F   G+  ++ +L
Sbjct:  161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE--VMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKL 373          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.371e-25
Identity = 65/215 (30.23%), Postives = 122/215 (56.74%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGADTNN*PEHSSFCLLRERTLF-EKITDKPSAEKKKKLFPPHGEFRKIGQL 733
            P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A++A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L   P +  +NRGF F  Y ++  A  +R+++     K+ GN  T+  AD    P+     + + + LF   + +  + E  +K F   G+  ++ +L
Sbjct:  158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE--VMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL 370          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.627e-25
Identity = 65/215 (30.23%), Postives = 122/215 (56.74%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGADTNN*PEHSSFCLLRERTLF-EKITDKPSAEKKKKLFPPHGEFRKIGQL 733
            P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A++A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L   P +  +NRGF F  Y ++  A  +R+++     K+ GN  T+  AD    P+     + + + LF   + +  + E  +K F   G+  ++ +L
Sbjct:   68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE--VMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKL 280          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 9.627e-25
Identity = 65/215 (30.23%), Postives = 122/215 (56.74%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGADTNN*PEHSSFCLLRERTLF-EKITDKPSAEKKKKLFPPHGEFRKIGQL 733
            P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A++A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L   P +  +NRGF F  Y ++  A  +R+++     K+ GN  T+  AD    P+     + + + LF   + +  + E  +K F   G+  ++ +L
Sbjct:  158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE--VMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKL 370          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: A1CF_RAT (APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.840e-22
Identity = 56/167 (33.53%), Postives = 100/167 (59.88%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592
            P  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K+ AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + +     + ++NRGF+F  Y ++  A ++R+++     +L G+   +  A+
Sbjct:   52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAE 217          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: A1CF_PONAB (APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.628e-22
Identity = 58/169 (34.32%), Postives = 100/169 (59.17%), Query Frame = 2
Query:   89 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592
            A P  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K  AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + +     + ++NRGF+F  Y ++  A ++R+K+     +L G+   +  A+
Sbjct:   50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAE 217          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: A1CF_HUMAN (APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.628e-22
Identity = 57/161 (35.40%), Postives = 97/161 (60.25%), Query Frame = 2
Query:   89 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGN 568
            A P  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K  AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + +     + ++NRGF+F  Y ++  A ++R+K+     +L G+
Sbjct:   50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGH 209          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: RBM46_MOUSE (Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.962e-22
Identity = 61/167 (36.53%), Postives = 101/167 (60.48%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592
            PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+ AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +     + ++NRGF+F  Y ++  A ++R+K+    F+L G+T  +  AD
Sbjct:   57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWAD 222          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: RBM46_MACFA (Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.962e-22
Identity = 61/167 (36.53%), Postives = 101/167 (60.48%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592
            PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+ AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +     + ++NRGF+F  Y ++  A ++R+K+    F+L G+T  +  AD
Sbjct:   57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWAD 222          
BLAST of DY304814 vs. ExPASy Swiss-Prot
Match: RBM46_HUMAN (Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.962e-22
Identity = 61/167 (36.53%), Postives = 101/167 (60.48%), Query Frame = 2
Query:   95 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFALYYNNACAELSRQKMPCVNFKLGGNTPTLSGAD 592
            PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+ AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +     + ++NRGF+F  Y ++  A ++R+K+    F+L G+T  +  AD
Sbjct:   57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWAD 222          
The following BLAST results are available for this feature:
BLAST of DY304814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HNRPR_HUMAN3.309e-2531.16Heterogeneous nuclear ribonucleoprotein R OS=Homo ... [more]
HNRPQ_HUMAN7.371e-2530.23Heterogeneous nuclear ribonucleoprotein Q OS=Homo ... [more]
HNRPQ_RAT9.627e-2530.23Heterogeneous nuclear ribonucleoprotein Q OS=Rattu... [more]
HNRPQ_MOUSE9.627e-2530.23Heterogeneous nuclear ribonucleoprotein Q OS=Mus m... [more]
A1CF_RAT5.840e-2233.53APOBEC1 complementation factor OS=Rattus norvegicu... [more]
A1CF_PONAB7.628e-2234.32APOBEC1 complementation factor OS=Pongo abelii GN=... [more]
A1CF_HUMAN7.628e-2235.40APOBEC1 complementation factor OS=Homo sapiens GN=... [more]
RBM46_MOUSE9.962e-2236.53Probable RNA-binding protein 46 OS=Mus musculus GN... [more]
RBM46_MACFA9.962e-2236.53Probable RNA-binding protein 46 OS=Macaca fascicul... [more]
RBM46_HUMAN9.962e-2236.53Probable RNA-binding protein 46 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YM15RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304814 ID=DY304814; Name=DY304814; organism=Citrus clementina; type=EST; length=938bp
TGATGATTATACTCCACATGTGGAAGAGGAAGAAAAGCCCACTGCTTCTG
TTGGTGAAGACGAGAAAGATAAGCATGCCCAGCTTCTTGCCCTCCCTCCT
AATGGCTCAGAAGTTTTCATTGGTGGGCTTCCAAAGGATGCATCGGAAGA
GGACTTGAGGGATCTGTGTGAACCAATAGGCGATGTTTTTGAGGTGAGGT
TAATGAAAGACAAGGAGAGTGGAGAAAGCAAGGGTTTTGCTTTTGTATCA
TTCAGATCAAAAGAGTTTGCCAAGAAGGCCATCGATGAGTTACACAGTAA
AGAACTTAAGGGTAAAACAATAAGGTGTTCACTGTCAGAGACTAAAAACA
GGTTGTTTATTGGTAATGTTCCGAAGAACTGGACAGAGGATGAGTTCAGA
AAAGTCATTGAGGATGTTGGTCCTGGAGTTGAAACCATTGAGCTCATAAA
GGATCCTCAAAATCCTTCTCGTAATCGTGGTTTTTCCTTTGCTTTGTATT
ACAATAATGCCTGTGCTGAATTATCAAGGCAGAAAATGCCCTGTGTAAAC
TTTAAGCTGGGAGGAAATACTCCCACCCTCTCAGGGGCTGATACGAATAA
TTAACCTGAACACTCTAGCTTCTGCCTCCTCCGGGAAAGGACTTTATTTG
AAAAAATAACTGACAAACCTTCTGCGGAGAAAAAAAAAAAACTCTTCCCG
CCGCATGGGGAATTTAGAAAAATTGGCCAGCTCCCTAGTGAAACGTGGAA
ACCATGATTATAGCTTATCCCTTAATTTTAAATGTCAAAGGAATTACAAG
TCTTTCAAGGATTCCAAAAACCTTAAAAATTTTGGGCATATTATGTAGAG
TTTCTACTAGTCAACCCACTCACTTTCAAAAAAGATTTAAGAACAAAATT
CCCACACTCATCCCTCGCGGTTCTCTTATACATACCCC
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