DY304817

Overview
NameDY304817
Unique NameDY304817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length947
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: TT8_ARATH (Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.814e-79
Identity = 148/203 (72.91%), Postives = 169/203 (83.25%), Query Frame = 1
Query:   97 LQSILQEAVQSVQWTYSLFWQICPQQGILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQPTRRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLFIDDHQGHLHPPKPALSEHST 705
            LQ +L+ AVQSV WTYS+FWQ CPQQ +L+WG+GYYNGAIKTRKT QP EV+AEEA+L+RSQQLRELYE+L AGE+    R    ALSPEDLTE+EWFYLMCVSFSFP   G+PGKAYAR++HVWL+GANEVDSKTFSRAILAKSA IQTVVCIP LDGVVELGTT+KV ED+  V+  KS F D  + +   PKPALSEHST
Sbjct:   20 LQGLLKTAVQSVDWTYSVFWQFCPQQRVLVWGNGYYNGAIKTRKTTQPAEVTAEEAALERSQQLRELYETLLAGESTSEARA-CTALSPEDLTETEWFYLMCVSFSFPPPSGMPGKAYARRKHVWLSGANEVDSKTFSRAILAKSAKIQTVVCIPMLDGVVELGTTKKVREDVEFVELTKSFFYDHCKTN---PKPALSEHST 218          
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: EGL1_ARATH (Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.184e-54
Identity = 108/209 (51.67%), Postives = 147/209 (70.33%), Query Frame = 1
Query:   97 LQSILQEAVQSVQWTYSLFWQICPQQ-GILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETN-----QPTRRPSAA-LSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLFIDDHQGHLHPPKPALSEHS 702
            L+  L  +V+++QW+Y +FW +   Q G+L WGDGYYNG IKTRKT+Q  EV  ++  L+RS+QLRELYESLS  E++     Q TRR SAA LSPEDLT++EW+YL+C+SF F  G G+PG A +  + +WL  A   DSK F+R++LAKSA +QTVVC PFL GV+E+GTTE + ED+ ++Q VK+LF++       PP   +S  S
Sbjct:   13 LKKQLAVSVRNIQWSYGIFWSVSASQPGVLEWGDGYYNGDIKTRKTIQAAEVKIDQLGLERSEQLRELYESLSLAESSASGSSQVTRRASAAALSPEDLTDTEWYYLVCMSFVFNIGEGIPGGALSNGEPIWLCNAETADSKVFTRSLLAKSASLQTVVCFPFLGGVLEIGTTEHIKEDMNVIQSVKTLFLE------APPYTTISTRS 215          
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: GL3_ARATH (Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.674e-54
Identity = 103/205 (50.24%), Postives = 144/205 (70.24%), Query Frame = 1
Query:   67 GMDAPPPSSRLQSILQEAVQSVQWTYSLFWQI-CPQQGILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETN--------QPTRRPSAA-LSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLFID 651
            G +       L+  L  +V+++QW+Y +FW +   Q G+L WGDGYYNG IKTRKT+Q  E+ A++  L+RS+QL ELYESLS  E++        Q TRR SAA LSPEDL ++EW+YL+C+SF F  G G+PG+ +A  + +WL  A+  DSK FSR++LAKSA ++TVVC PFL GVVE+GTTE + ED+ ++Q VK+ F++
Sbjct:    4 GQNRTTVPENLKKHLAVSVRNIQWSYGIFWSVSASQSGVLEWGDGYYNGDIKTRKTIQASEIKADQLGLRRSEQLSELYESLSVAESSSSGVAAGSQVTRRASAAALSPEDLADTEWYYLVCMSFVFNIGEGMPGRTFANGEPIWLCNAHTADSKVFSRSLLAKSAAVKTVVCFPFLGGVVEIGTTEHITEDMNVIQCVKTSFLE 208          
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: ARRS_MAIZE (Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 8.218e-48
Identity = 95/218 (43.58%), Postives = 143/218 (65.60%), Query Frame = 1
Query:   70 MDAPPPSSRLQSILQEAVQSVQWTYSLFWQICPQQ-GILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQPTR--RPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLFIDDHQGHLHPPKPALSEHSTSNP 714
            +  P     ++S L  A +S+ W+Y+LFW I   Q G+L W DG+YNG +KTRK    +E+++++  +QRS QLRELYE+L +GE ++     RP+ +LSPEDL ++EW+Y++ ++++F  G GLPG+++A  +HVWL  A+   SK F RA+LAKSA IQ+++CIP + GV+ELGTT+ VPE   LV    + F +       P  P  SE  +S+P
Sbjct:   15 LQRPAERQLMRSQLAAAARSINWSYALFWSISDTQPGVLTWTDGFYNGEVKTRKISNSVELTSDQLVMQRSDQLRELYEALLSGEGDRRAAPARPAGSLSPEDLGDTEWYYVVSMTYAFRPGQGLPGRSFASDEHVWLCNAHLAGSKAFPRALLAKSASIQSILCIPVMGGVLELGTTDTVPEAPDLVSRATAAFWE-------PQCPTYSEEPSSSP 225          
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: ARLC_MAIZE (Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.550e-46
Identity = 89/195 (45.64%), Postives = 134/195 (68.72%), Query Frame = 1
Query:   70 MDAPPPSSRLQSILQEAVQSVQWTYSLFWQICPQQ-GILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQPTR--RPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLF 645
            +  P     ++S L  A +S+ W+Y+LFW I   Q G+L W DG+YNG +KTRK    +E+++++  +QRS QLRELYE+L +GE ++     RP+ +LSPEDL ++EW+Y++ ++++F  G GLPG+++A  +HVWL  A+   SK F RA+LAKSA IQ+++CIP + GV+ELGTT+ VPE   LV    + F
Sbjct:   15 LQRPAERQLMRSQLAAAARSINWSYALFWSISDTQPGVLTWTDGFYNGEVKTRKISNSVELTSDQLVMQRSDQLRELYEALLSGEGDRRAAPARPAGSLSPEDLGDTEWYYVVSMTYAFRPGQGLPGRSFASDEHVWLCNAHLAGSKAFPRALLAKSASIQSILCIPVMGGVLELGTTDTVPEAPDLVSRATAAF 209          
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: BH012_ARATH (Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.231e-35
Identity = 85/219 (38.81%), Postives = 129/219 (58.90%), Query Frame = 1
Query:   55 TVGKGMDAPPPSSRLQSILQE-----AVQSVQWTYSLFWQIC-PQQGILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQPT--------------RRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLFID 651
            T+  G++A    S+ Q+ L       AV+SVQW+Y++FW     Q G+L WG+G YNG +K RK       S  +  LQ+S++LR+LY S+  G++                     S  LSP+DL++ EW+YL+ +S+ F     LPG+A A  + +WL  A   ++K FSR++LA+SA IQTVVC P+L GV+ELG TE + ED  L++++KS  ++
Sbjct:    4 TMADGVEAAAGRSKRQNSLLRKQLALAVRSVQWSYAIFWSSSLTQPGVLEWGEGCYNGDMKKRKKSYE---SHYKYGLQKSKELRKLYLSMLEGDSGTTVSTTHDNLNDDDDNCHSTSMMLSPDDLSDEEWYYLVSMSYVFSPSQCLPGRASATGETIWLCNAQYAENKLFSRSLLARSASIQTVVCFPYLGGVIELGVTELISEDHNLLRNIKSCLME 219          
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.364e-23
Identity = 67/206 (32.52%), Postives = 106/206 (51.46%), Query Frame = 1
Query:   70 MDAPPPSSRLQSILQEAVQSV------QWTYSLFWQICPQ---QGILIWGDGYYNGAI-----KTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQPTRRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLF 645
            M+ P  +   Q  LQ+ +Q++       WTY++FWQ         +L WGDGYY G       + R +  P    A++    R + LREL   +S G        PS     E++T++EWF+L+ ++ SF  G GL GKA+A    VW++G++++      RA       + T+ CIP  +GVVE+G+TE + +   L+  V+ LF
Sbjct:   55 MEIPAQAGFNQETLQQRLQALIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANPRRRSSSPPFSTPADQE--YRKKVLRELNSLISGGVA------PSDDAVDEEVTDTEWFFLVSMTQSFACGAGLAGKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSANGVVEVGSTEPIRQSSDLINKVRILF 252          
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.561e-22
Identity = 71/223 (31.84%), Postives = 116/223 (52.02%), Query Frame = 1
Query:   94 RLQSILQEAVQSVQWTYSLFWQIC--------PQQGILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQPTRRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLFIDDHQGHLHPPKPALSEHSTSNPDTSSCPPA 738
            RLQ++++ A ++  WTY++FWQI             IL WGDGYY G     K       + +E    R + +REL   +S G         S   + E++T++EWF+L+ ++ SF +GVGLPG+++   + +WL+G+  +      RA   +   ++T+VCI   +GVVELG++E + +   L+  V +LF + + G  +    A S     NPD     PA
Sbjct:   55 RLQALIESAGEN--WTYAIFWQISHDFDSSTGDNTVILGWGDGYYKGEEDKEKKKNNTNTAEQE---HRKRVIRELNSLISGGIG------VSDESNDEEVTDTEWFFLVSMTQSFVNGVGLPGESFLNSRVIWLSGSGALTGSGCERAGQGQIYGLKTMVCIATQNGVVELGSSEVISQSSDLMHKVNNLF-NFNNGGGNNGVEASSWGFNLNPDQGENDPA 265          
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.745e-22
Identity = 65/208 (31.25%), Postives = 106/208 (50.96%), Query Frame = 1
Query:   79 PPP---------SSRLQSILQEAVQSVQWTYSLFWQICP----------QQGILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNQPTRRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLF 645
            PPP           RLQ++++ A ++  WTY++FWQ                +L WGDGYY G  +  +  +    SA E    R + +REL   +S G               E++T++EWF+L+ ++ SF  G GLPG+A++    +WL+G+N +   +  RA   +   +QT+VC+   +GVVELG++E + +   LV  V + F
Sbjct:   52 PPPLPQVNEDNLQQRLQALIEGANEN--WTYAVFWQSSHGFAGEDNNNNNTVLLGWGDGYYKGEEEKSRKKKSNPASAAEQE-HRKRVIRELNSLISGGVGG------GDEAGDEEVTDTEWFFLVSMTQSFVKGTGLPGQAFSNSDTIWLSGSNALAGSSCERARQGQIYGLQTMVCVATENGVVELGSSEIIHQSSDLVDKVDTFF 250          
BLAST of DY304817 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.844e-21
Identity = 74/221 (33.48%), Postives = 113/221 (51.13%), Query Frame = 1
Query:   25 KRSRESLAVNTVGKG--MDAPPPSSRLQSILQEAVQ-----SVQWTYSLFWQICPQQG---ILIWGDGYYNGAIKTRKT--VQPMEVSAEEASLQ--RSQQLRELYESLSAGETNQPTRRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARQQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPFLDGVVELGTTEKVPEDLALVQHVKSLF 645
            KR+ + L  N+V     +        LQ+ L + V+     +  W Y++FWQI   +    +L WGDGY     +  K+  V+ + +  EE + Q  R + L++L++     E        + AL  + +T++E F L  + FSFP G G PGK +A  + VWL+      S    R+ LAKSA IQTVV +P   GVVELG+T  +PE    +  ++SLF
Sbjct:   22 KRALDYLLSNSVSNANLLMTLGSDENLQNKLSDLVERPNASNFSWNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTMRKRVLQKLHDLFGGSEEE------NCALGLDRVTDTEMFLLSSMYFSFPRGEGGPGKCFASAKPVWLSDVVNSGSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSTSCLPESEDSILSIRSLF 236          
The following BLAST results are available for this feature:
BLAST of DY304817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TT8_ARATH1.814e-7972.91Transcription factor TT8 OS=Arabidopsis thaliana G... [more]
EGL1_ARATH1.184e-5451.67Transcription factor EGL1 OS=Arabidopsis thaliana ... [more]
GL3_ARATH7.674e-5450.24Transcription factor GLABRA 3 OS=Arabidopsis thali... [more]
ARRS_MAIZE8.218e-4843.58Anthocyanin regulatory R-S protein OS=Zea mays GN=... [more]
ARLC_MAIZE1.550e-4645.64Anthocyanin regulatory Lc protein OS=Zea mays GN=L... [more]
BH012_ARATH1.231e-3538.81Transcription factor MYC1 OS=Arabidopsis thaliana ... [more]
RAP1_ARATH5.364e-2332.52Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH1.561e-2231.84Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH004_ARATH7.745e-2231.25Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
BH013_ARATH3.844e-2133.48Transcription factor bHLH13 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YM19RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304817 ID=DY304817; Name=DY304817; organism=Citrus clementina; type=EST; length=947bp
ATGGAATTCTAAGAAAGTAATTAAAAAAGAAGCAGAGAATCTCTGGCGGT
GAATACAGTCGGTAAAGGAATGGATGCTCCGCCGCCGAGTAGCCGTCTTC
AAAGTATTCTCCAGGAGGCGGTGCAATCCGTTCAGTGGACTTACAGCCTC
TTTTGGCAAATCTGTCCTCAGCAAGGGATCTTAATATGGGGAGATGGGTA
TTATAATGGAGCAATCAAGACTAGGAAAACAGTGCAGCCAATGGAGGTTA
GTGCTGAGGAGGCGTCTCTACAAAGAAGCCAGCAGCTAAGAGAGTTATAC
GAGTCACTTTCCGCCGGAGAGACGAACCAGCCAACAAGGAGGCCATCTGC
GGCTTTGTCGCCGGAGGACTTGACGGAGTCCGAATGGTTCTATTTGATGT
GTGTTTCCTTCTCGTTTCCTTCCGGAGTTGGGTTACCAGGAAAGGCATAC
GCAAGGCAGCAGCATGTATGGCTTACCGGAGCAAATGAGGTCGACAGCAA
AACTTTCTCTAGAGCAATTCTTGCCAAGAGTGCACATATACAGACTGTGG
TATGCATTCCTTTTCTTGACGGAGTTGTTGAACTTGGCACAACAGAAAAG
GTCCCGGAGGACCTTGCATTGGTTCAACATGTGAAGAGCCTCTTCATTGA
TGACCACCAAGGCCACCTTCACCCACCAAAACCAGCTCTCTCCGAGCACT
CAACCTCAAATCCTGACACCTCATCCTGCCCACCTGCGTTTTCATTCCCA
ACCTAAGTCCCCCATGTGCGCAGTCTGTAAACAATGAACCGCCAGTCAAC
GCCAACCAAGGAAAAAATAATGACCAAGAAAAACAACAACACCACCGACA
ACAAAGATCCGGAACATTCCCACTCTTGAACCTGAAAACGGAGAGTTAAC
AACGTCCAAGGGGGCTCTTGAACCAATCCCTGAAACCCATTTTCCCG
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