DY304818

Overview
NameDY304818
Unique NameDY304818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length935
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.480e-81
Identity = 180/296 (60.81%), Postives = 201/296 (67.91%), Query Frame = 1
Query:   25 MAASSACLVGNIL-ITQKTKTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLS-EKQHEGRRGFLKKLLGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            MAASSACLVGN L +   TK  LSK F GR     +SF S+ +  KV VVKASL  +K+ EGRR FLK LLGN GVG  L+ SGKA ADEQGVSSSRMSYSRFLEYLDKDRV KVDL+ENGTIAIVEA+SPELGNRV+RVRVQLPGLSQELLQK R KNIDFAAHNAQED GS+LFNLIGN                                   QSKAKFQMEPNTGVTFDDVAGVDEAKQ   +    L+ P+       +IP+    +GPPGTGK L  ++ +  + GV FF
Sbjct:    1 MAASSACLVGNGLSVNTTTKQRLSKHFSGRQ----TSFSSVIRTSKVNVVKASLDGKKKQEGRRDFLKILLGNAGVG--LVASGKANADEQGVSSSRMSYSRFLEYLDKDRVNKVDLYENGTIAIVEAVSPELGNRVERVRVQLPGLSQELLQKLRAKNIDFAAHNAQEDQGSVLFNLIGNLAFPALLIGGLFLLSRRSGGGMGGPGGPGNPLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKA-IAGEAGVPFF 289          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.274e-77
Identity = 170/296 (57.43%), Postives = 188/296 (63.51%), Query Frame = 1
Query:   25 MAASSACLVGNILITQKTKTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLSEKQHEGRRGFLKKLLGNVGVGTALLGSGKAYADEQG--VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            MAASSACL+GN L    TK    K               L++  KV VVKASL EK+HEGRRGF K LLGN   G  LL SG A ADEQG  VSSSRMSYSRFLEYLDK RV+KVDL+ENGTIAIVEA+SPELGNR+QRVRVQLPGLSQELLQK R KNIDFAAHNAQED GS + NLIGN                                   QSKAKFQMEPNTGVTFDDVAGVDEAKQ   +    L+ P+       RIP+    +GPPGTGK L  ++ +  + GV FF
Sbjct:    1 MAASSACLLGNGLSVYTTKQRFQK-------------LGLDRTSKVTVVKASLDEKKHEGRRGFFKLLLGNAAAGVGLLASGNANADEQGQGVSSSRMSYSRFLEYLDKGRVEKVDLYENGTIAIVEAVSPELGNRIQRVRVQLPGLSQELLQKLRAKNIDFAAHNAQEDQGSPILNLIGNLAFPVILIGGLFLLSRRSSGGMGGPGGPGFPLQIGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKA-IAGEAGVPFF 282          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.155e-70
Identity = 153/247 (61.94%), Postives = 170/247 (68.83%), Query Frame = 1
Query:  169 VKASLSEKQHEGRRGFLKKLLGNVGVGT-ALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            V ASL  K ++ RR FLK  LGN+GVG   LLG+ +A A+EQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQK REKNIDFAAH+ QEDSGSLLFNLIGN                                   QS+AKFQMEPNTGVTFDDVAGVDEAKQ   +    L+ P+       RIP+    +GPPGTGK L  ++ +  + GV FF
Sbjct:   31 VTASLEHKTNDARRKFLKLALGNLGVGLPTLLGAKRALAEEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLREKNIDFAAHSNQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRAQGGLGGPNGPGFPLGFGQSRAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKA-IAGEAGVPFF 276          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.596e-38
Identity = 104/260 (40.00%), Postives = 138/260 (53.08%), Query Frame = 1
Query:  136 RSLEKKPKVAVVKASLSEKQHEGRRGFLKKLLGNVGVGTALLGSGKAYADE---QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            R+     K+    +S SE     RR  L+     +G+G  L  +  A A+    + V+S+RMSYSRFLEYLD   VKKVD FENGT+A+ E       +RV RV+VQLPGL  EL++K R+K +DFAAH  +  +G +L +L+ N                                   +SKAKFQMEP TGVTFDDVAGVDEAKQ   +    L+ P+       R P+    +GPPGTGK L  ++ +  + GV FF
Sbjct:   30 RTTPPPAKITPPSSSSSEAAGLSRRRLLQS--AGLGLGLGLTAARPARAEATAPEEVTSNRMSYSRFLEYLDAGAVKKVDFFENGTVAVAEVDDAAALSRVHRVKVQLPGLPAELVRKLRDKGVDFAAHPVEPSAGVMLLDLLVN---FGFPLLFVASLLWRSPTMNNPGGGPSLPFGLGKSKAKFQMEPKTGVTFDDVAGVDEAKQDFQEIVQFLKFPEKFTAVGARTPKGVLLVGPPGTGKTLLAKA-IAGEAGVPFF 283          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.351e-37
Identity = 94/222 (42.34%), Postives = 129/222 (58.11%), Query Frame = 1
Query:  244 VGTALLGSGKAYADEQ-GVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            +GT L    KA  +     +S+RMSYSRFL++L ++ VKKVDL ENGT+AIVE  +P +G ++QRVRV LPGL  +L+++ +EKN+DFAAH    + G+ L N +GN                                   +SKAKFQMEPNTG+TF+DVAGVDEAKQ   +    L++P+       +IP+     GPPGTGK L  ++ +  + GV FF
Sbjct:   71 LGTVLAHPAKAEPEAPIEATSNRMSYSRFLQHLKENEVKKVDLIENGTVAIVEISNPVVG-KIQRVRVNLPGLPVDLVREMKEKNVDFAAHPMNVNWGAFLLNFLGN----LGFPLILLVSLLLTSSSRRNPAGPNLPFGLGRSKAKFQMEPNTGITFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKA-IAGEAGVPFF 286          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.067e-34
Identity = 87/206 (42.23%), Postives = 119/206 (57.77%), Query Frame = 1
Query:  289 QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            + ++SSRM+Y RFLEYLD   VKKVDL++ G  AIVEAI PELGNR+QR+RV+LP  + EL+ K R+ N+D  AH   + + +  ++LIGN                                   +SKA+FQME  TGVTF+DVAGVDEAK+   +  S L+ P+       +IP+    +GPPGTGK L  ++ +  + GV FF
Sbjct:   36 KNIASSRMTYGRFLEYLDLGWVKKVDLYDEGHTAIVEAIGPELGNRIQRIRVELPATAPELITKLRKANVDLDAHATNDSTPA--WSLIGN---LIFPILLIAGLAFLFRRSSNLPGGPGQAMNFGKSKARFQMEAKTGVTFNDVAGVDEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKA-IAGEAGVPFF 235          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.630e-32
Identity = 85/204 (41.67%), Postives = 116/204 (56.86%), Query Frame = 1
Query:  295 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            ++SSRM+Y RFLEYLD   VK+VDL+EN   AIVEA+ PELGNRVQR+RV+LP  + EL+ K R+ N+D  AH  +  S S ++ L+GN                                   +SKA FQME  TGV F+DVAGV+EAK+   +  + L+ P+       +IP+    +GPPGTGK L  ++ +  + GV FF
Sbjct:   38 IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVELPASAPELITKLRKANVDLDAHPPK--STSAVWGLLGN---LLFPLILVGGLAFLFRRSNNASGGPGQAMSFGKSKALFQMEAKTGVVFNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKA-IAGEAGVPFF 235          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 8.089e-32
Identity = 84/204 (41.18%), Postives = 115/204 (56.37%), Query Frame = 1
Query:  295 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            ++SSRM+Y RFLEYLD   VK+VDL+EN   AIVEA+ PELGNRVQR+RV+LP  + EL+ K R+ N+D  AH  +  S S ++ L+GN                                   +SKA FQME  TGV F+DVAGV+EAK+   +  + L+ P+       +IP+    +GPPGTGK L  ++ +  +  V FF
Sbjct:   38 IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVELPASAPELITKLRKANVDLDAHPPK--STSAVWGLLGN---LLFPLLLVGGLAFLFRRSNNASGGPGQAMSFGKSKALFQMEAKTGVVFNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKA-IAGEASVPFF 235          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.693e-27
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 1
Query:  295 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNL 861
            V SS+M+Y RFLEYL+   V +VDL++N   AIV+A SPELGNR Q +RV++P  + +L+QK +E NIDF AH A++   ++  N++ N                                   +S A+F+  P+TGV+F D+AG+DEAK    +  S L+ P    +   +IP+    +GPPGTGK L
Sbjct:   50 VISSKMTYGRFLEYLEMGWVNQVDLYDNSRNAIVQASSPELGNRPQTIRVEIPVGASQLIQKLKEYNIDFDAHPAEQK--NIFVNILSN--ILLPIIFITGLVYLFQNSENFGGGSGQSPMSLGKSTARFERRPDTGVSFKDIAGIDEAKTEFEEIVSFLKEPDKYTIVGAKIPKGILLVGPPGTGKTL 234          
BLAST of DY304818 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.251e-24
Identity = 77/225 (34.22%), Postives = 114/225 (50.67%), Query Frame = 1
Query:  232 GNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDDVAGVDEAKQISWKWWSSLRSPKDLLLWEPRIPRVFFPLGPPGTGKNLSCQSKLPVKPGVSFF 906
            G+ G   A LGS  A        ++RM+Y RFLEY+D  R+  VDL+ENG  AIV+   PE+ +R  R RV LP  + EL+ + R+ NI   +H  +  +  +++  +GN                                   +SKA+FQM+  TGV FDDVAG+DEAK+   +  + L+ P+       +IP+    +GPPGTGK L  ++ +  + GV FF
Sbjct:   25 GSFGGADANLGSNTA--------NTRMTYGRFLEYVDAGRITSVDLYENGRTAIVQVSDPEV-DRTLRSRVDLPTNAPELIARLRDSNIRLDSHPVR--NNGMVWGFVGN---LIFPVLLIASLFFLFRRSSNMPGGPGQAMNFGKSKARFQMDAKTGVMFDDVAGIDEAKEELQEVVTFLKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKA-IAGEAGVPFF 234          
The following BLAST results are available for this feature:
BLAST of DY304818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FTSH2_ARATH2.480e-8160.81Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH1.274e-7757.43Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ORYSJ1.155e-7061.94Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ORYSJ2.596e-3840.00Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ARATH8.351e-3742.34Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_GUITH5.067e-3442.23Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_PORPU1.630e-3241.67Cell division protease ftsH homolog OS=Porphyra pu... [more]
FSTH_PORYE8.089e-3241.18Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_ODOSI2.693e-2738.10Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH1_SYNY31.251e-2434.22Cell division protease ftsH homolog 1 OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YM20RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304818 ID=DY304818; Name=DY304818; organism=Citrus clementina; type=EST; length=935bp
TTCCAAACAATTCTTTCTTTCAAGATGGCAGCTTCATCAGCTTGCCTTGT
AGGGAATATTTTGATAACACAAAAAACTAAAACAAATTTGAGCAAGGACT
TCCATGGTAGGCATCTTCTGTTTAACTCGAGTTTTCGATCATTGGAAAAG
AAGCCAAAAGTAGCCGTTGTAAAGGCATCTTTGAGCGAGAAGCAGCATGA
AGGAAGAAGAGGGTTTCTTAAGAAGCTGCTTGGAAATGTTGGAGTTGGTA
CTGCTTTGTTGGGGAGTGGGAAAGCCTATGCCGATGAACAGGGGGTTTCT
TCCTCGAGGATGTCTTACTCTAGGTTCTTGGAGTATCTTGATAAGGACAG
GGTGAAGAAGGTTGATTTGTTTGAGAATGGTACCATAGCTATTGTGGAGG
CTATTTCCCCTGAGTTGGGTAACCGGGTGCAACGAGTTCGCGTTCAACTT
CCAGGTCTAAGTCAGGAGCTTCTCCAGAAATTCAGGGAGAAGAACATTGA
TTTTGCTGCCCATAATGCTCAAGAGGACTCAGGATCATTGTTGTTTAACT
TGATTGGGAATCTGGCTTTCCCACTTATCTTAATTGGAGGGCTGTTCCTT
CTCTCAAGGCGTTCATCTGGTGGAATGGGCGGTCCTGGTGGGCCTGGTTT
CCCCCTTGCCTTTGGTCAGTCCAAAGCTAAATTCCAGATGGAACCAAATA
CTGGTGTGACATTTGATGATGTTGCCGGAGTTGATGAGGCAAAACAGATT
TCCTGGAAGTGGTGGAGTTCCCTTAGAAGCCCGAAAGATTTACTGCTATG
GGAACCTCGTATCCCAAGGGTGTTCTTCCCCCTTGGTCCTCCCGGAACTG
GGAAAAACCTCTCTTGCCAAAGCAAATTGCCGGTGAAACCCGGTGTTTCA
TTTTTTCTCCCAATCAGGGTCCGAATTTTTGTTAA
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