DY304821

Overview
NameDY304821
Unique NameDY304821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: KDSR_HUMAN (3-ketodihydrosphingosine reductase OS=Homo sapiens GN=KDSR PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.780e-30
Identity = 75/206 (36.41%), Postives = 130/206 (63.11%), Query Frame = 3
Query:   90 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQGAKEGARVSILARSGEKLKEAKQSIQLATGIE---VATYSADV-RDFDAVKTALDEA----GPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPKVIADDIHVSLKFPPETQNP 683
            ++ PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL +AK+ I++ +  +   V   S DV +D++ V+  + +A    GPV +LV   G+ V G+ E   +     ++ +N +GS +  +A +  +K+R+ G    I  +SS AG +G++G+T YSASKF +RGLAEALQ +V   ++++++ +PP+T  P
Sbjct:   22 LISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVG---RIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTP 222          
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: KDSR_BOVIN (3-ketodihydrosphingosine reductase OS=Bos taurus GN=KDSR PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.855e-30
Identity = 73/208 (35.10%), Postives = 127/208 (61.06%), Query Frame = 3
Query:   90 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQGAKEGARVSILARSGEKLKEAKQSIQ----------LATGIEVATYSADVRDFDAVKTALDEAGPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPKVIADDIHVSLKFPPETQNP 683
            ++ PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL +AK+ I+          L   ++V+   + V +   +K A ++ GPV +LV   G+ + G+ E   +     ++ +N +GS +  +A +  +K+R+ G    +  +SS AG +G++GYT YS+SKF LRGLAEALQ +V   +++V++ +PP+T  P
Sbjct:   22 LISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVEN--VIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSINYLGSVYPSRAVIATMKERRMG---RVVFVSSQAGQLGLFGYTAYSSSKFALRGLAEALQMEVKPYNVYVTVAYPPDTDTP 222          
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: KDSR_MOUSE (3-ketodihydrosphingosine reductase OS=Mus musculus GN=Kdsr PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.740e-29
Identity = 74/206 (35.92%), Postives = 128/206 (62.14%), Query Frame = 3
Query:   90 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQGAKEGARVSILARSGEKLKEAKQSIQLATGIE---VATYSADV-RDFDAVKTALDEA----GPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPKVIADDIHVSLKFPPETQNP 683
            ++ PKP+ +P    HV +TGGSSGIG  +A +  K+GA ++++AR+ +KL +AK+ I+  +  +   V   S DV +D++ V+  + +A    GPV +LV   G  + G+ E   +     ++ +N +GS +  +A +  +K+R+ G    I  +SS AG +G++G+T YS+SKF +RGLAEALQ +V   +++V++ +PP+T  P
Sbjct:   22 LISPKPLALP--GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFEKLMSINYLGSVYPSRAVITTMKERRVG---RIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVAYPPDTDTP 222          
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: KDSR_DICDI (3-ketodihydrosphingosine reductase OS=Dictyostelium discoideum GN=ksrA-1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.085e-19
Identity = 75/260 (28.85%), Postives = 124/260 (47.69%), Query Frame = 3
Query:   90 IVRPKPVRIPIKDRHVFITGGSSGIGLALAHQGAKEG-ARVSILARSGEKLKEA---------KQSIQLATGI---EVATYSADVRDFDAVKTAL------DEAGPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPKVIADDIHVSLKFPPETQNPRPKGRKQKKNTAXXXXXXXXXGGNE-NLINFPRNPLNGIKTGD 809
            +V  K     +K +H+ + GGSSGIG  L ++  KE  A +S+++RS +KL+            +S  L  G    ++  YS D+ +   VK  +      ++ G +  L+   G  +PG    Q  +     + ++  GS +  K  +PL+ +   G    I  +SS  G VG+ GY+ Y  SKF LRGLAE L+ ++    I  S+ +PP+T  P   G +Q+  T          GG   + +   ++ ++GIK GD
Sbjct:   17 LVYKKQTGFKLKGKHIVVVGGSSGIGKELVYELLKENIASISVISRSLDKLRSVVDDCPSEVCTKSTPLNVGSLKSKIEIYSCDITNKIKVKETIAQIVSKNQGGKIDCLINCAGFAIPGYFIEQDEEIFEKTMQLDYFGSLYATKEVVPLMIENG-GQGGHIVFVSSTCGLVGVPGYSTYCPSKFALRGLAETLRSELKPYKITFSVVYPPDTDTP---GYQQENLTKPEETVAISGGGKAVSPLEVAKSIVSGIKNGD 272          
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: YOXD_BACSU (Uncharacterized oxidoreductase yoxD OS=Bacillus subtilis GN=yoxD PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.417e-19
Identity = 63/186 (33.87%), Postives = 102/186 (54.84%), Query Frame = 3
Query:  120 IKDRHVFITGGSSGIGLALAHQGAKEGARVSILARSGEKLKEAKQSIQLATGIEVATYSADVRDFDAVKTAL----DEAGPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPKVIADDIHVSLKFP 665
            ++ +   ITGG  GIG A A   AKEG  + ++ R+   +++  + ++ A G++ A  +ADV+D D V  A+    ++ G + +L+ N G+   G     S DE   +I VN++G +H+ +A LP + +R+ G   +I   SS AG  G    + YSASKF + GL E+L  +V   +I VS   P
Sbjct:    4 LQHKTALITGGGRGIGRATALALAKEGVNIGLIGRTSANVEKVAEEVK-ALGVKAAFAAADVKDADQVNQAVAQVKEQLGDIDILINNAGISKFGGFLDLSADEWENIIQVNLMGVYHVTRAVLPEMIERKAGDIINI---SSTAGQRGAAVTSAYSASKFAVLGLTESLMQEVRKHNIRVSALTP 185          
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: DHB1_HUMAN (Estradiol 17-beta-dehydrogenase 1 OS=Homo sapiens GN=HSD17B1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.501e-16
Identity = 68/183 (37.16%), Postives = 97/183 (53.01%), Query Frame = 3
Query:  135 VFITGGSSGIGLALA-------HQGAKEGARVSILARSGEKLKEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPKVIADDIHVSL 656
            V ITG SSGIGL LA        Q  K  A +  L   G +L EA +++    G  + T   DVRD  +V  A +    G V VLV N G+ + G LEA   D V  ++DVN++G+  M++A LP +K+R   G+  + +  S  G +G+     Y ASKF L GL E+L   ++   +H+SL
Sbjct:    6 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQG-RLWEAARALACPPG-SLETLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR---GSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSL 183          
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: YQJQ_BACSU (Uncharacterized oxidoreductase yqjQ OS=Bacillus subtilis GN=yqjQ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.267e-16
Identity = 58/190 (30.53%), Postives = 97/190 (51.05%), Query Frame = 3
Query:  120 IKDRHVFITGGSSGIGLALAHQGAKEGARVSILARSGEKLKEAKQSIQLATGIEVATYSADVRDFDAVKTALDEAGPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPKVIADDIHVSLKFPPETQNPRP 689
            I  + ++ITG S G+G  +A+  A EGA V + AR  ++L E K+ I      +   +  DV   + +    D+ G + VL+ N G  +   +   +LD+++ M DVN+ G     KA LP + +++KG   +IA   S AG +     + YSA+K  + G + AL+ ++    I+V+      T NP P
Sbjct:    4 IAGKRIWITGASGGLGERIAYLCAAEGAHVLLSARREDRLIEIKRKITEEWSGQCEIFPLDVGRLEDIARVRDQIGSIDVLINNAGFGIFETVLDSTLDDMKAMFDVNVFGLIACTKAVLPQMLEQKKGHIINIA---SQAGKIATPKSSLYSATKHAVLGYSNALRMELSGTGIYVT------TVNPGP 184          
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: DHB1_PANTR (Estradiol 17-beta-dehydrogenase 1 OS=Pan troglodytes GN=HSD17B1 PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 7.278e-16
Identity = 67/183 (36.61%), Postives = 97/183 (53.01%), Query Frame = 3
Query:  135 VFITGGSSGIGLALA-------HQGAKEGARVSILARSGEKLKEAKQSIQLATGIEVATYSADVRDFDAVKTALDEA--GPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPKVIADDIHVSL 656
            V ITG SSGIGL LA        Q  K  A +  L   G +L EA +++    G  + T   DVRD  +V  A +    G V VLV N G+ + G LEA   D V  ++DVN++G+  +++A LP +K+R   G+  + +  S  G +G+     Y ASKF L GL E+L   ++   +H+SL
Sbjct:    6 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQG-RLWEAARALACPPG-SLETLQLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRVLQAFLPDMKRR---GSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSL 183          
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: Y1627_STAS1 (Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.118e-15
Identity = 60/188 (31.91%), Postives = 100/188 (53.19%), Query Frame = 3
Query:  120 IKDRHVFITGGSSGIGLALAHQGAKEGARVSILARSGEKLKEAKQSIQLATGIEVATYSADVRDFDAV----KTALDEAGPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPK--VIADDIHVSLKFP 665
            +KD+ V ITG SSGIG    +  ++ GA++ + AR  ++L++ +Q +   +   V+    DV   D V    +TA ++ G + VL+ N G+     LE    DE   MIDVNI G  + I A LP ++K++ G   ++A   S AGHV   G   Y  +K+ +R + E L+ +  ++  +I  ++  P
Sbjct:    4 VKDKVVVITGASSGIGEETVNLLSENGAKLVLGARRLDRLEKIQQKVGHDS---VSIKKTDVTKPDEVNALIETAYNDFGRIDVLINNAGLMPQSFLEKNKQDEWNQMIDVNIKGVLYGIGAVLPYMRKQKSGHIINLA---SVAGHVVFPGSAVYCGTKYAVRAITEGLRQEEAIVGSNIRTTILSP 185          
BLAST of DY304821 vs. ExPASy Swiss-Prot
Match: DHB1_RAT (Estradiol 17-beta-dehydrogenase 1 OS=Rattus norvegicus GN=Hsd17b1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.717e-15
Identity = 67/183 (36.61%), Postives = 94/183 (51.37%), Query Frame = 3
Query:  135 VFITGGSSGIGLALA-------HQGAKEGARVSILARSGEKLKEAKQSIQLATGIEVATYSADVRDFDAVKTALD--EAGPVYVLVVNQGVFVPGELEAQSLDEVRLMIDVNIIGSFHMIKAALPLIKKRQKGGAASIALMSSHAGHVGIYGYTPYSASKFGLRGLAEALQPKVIADDIHVSL 656
            V ITG SSGIGL LA        Q  K  A +  L   G  L+ A+        +E+     DVRD ++V  A      G V VLV N G  + G LEA  L+ V  ++DVN++G+  M++A LP +K+R  G    + + +S  G +G+  +  Y ASKF L GL E+L   +    +HVSL
Sbjct:    6 VLITGCSSGIGLHLAVRLASDRSQSFKVYATLRDLKSQGPLLEAARAQGCPPGSLEIL--ELDVRDSESVAAARACVTEGRVDVLVCNAGRGLFGPLEAHELNAVGAVLDVNVLGTIRMLQAFLPDMKRRHSG---RVLVTASVGGLMGLPFHEVYCASKFALEGLCESLAILLPLFGVHVSL 183          
The following BLAST results are available for this feature:
BLAST of DY304821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
KDSR_HUMAN6.780e-3036.413-ketodihydrosphingosine reductase OS=Homo sapiens... [more]
KDSR_BOVIN8.855e-3035.103-ketodihydrosphingosine reductase OS=Bos taurus G... [more]
KDSR_MOUSE5.740e-2935.923-ketodihydrosphingosine reductase OS=Mus musculus... [more]
KDSR_DICDI1.085e-1928.853-ketodihydrosphingosine reductase OS=Dictyosteliu... [more]
YOXD_BACSU1.417e-1933.87Uncharacterized oxidoreductase yoxD OS=Bacillus su... [more]
DHB1_HUMAN2.501e-1637.16Estradiol 17-beta-dehydrogenase 1 OS=Homo sapiens ... [more]
YQJQ_BACSU4.267e-1630.53Uncharacterized oxidoreductase yqjQ OS=Bacillus su... [more]
DHB1_PANTR7.278e-1636.61Estradiol 17-beta-dehydrogenase 1 OS=Pan troglodyt... [more]
Y1627_STAS12.118e-1531.91Uncharacterized oxidoreductase SSP1627 OS=Staphylo... [more]
DHB1_RAT4.717e-1536.61Estradiol 17-beta-dehydrogenase 1 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YM23RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304821 ID=DY304821; Name=DY304821; organism=Citrus clementina; type=EST; length=870bp
TCCATCGCCACCATCCAATGGCGGCTCTTTCATTTCTTGGTTTCCTCGTC
CTCCTCTTGCCACTGACTCTCCTCCTATTACTGTACCTCATCGTCCGTCC
CAAGCCCGTCAGGATCCCAATCAAAGACCGCCACGTGTTCATCACTGGGG
GATCCAGCGGCATCGGCCTGGCCCTGGCGCATCAGGGCGCAAAAGAAGGG
GCCCGGGTCTCCATCCTGGCACGGTCCGGCGAAAAACTAAAAGAAGCGAA
ACAATCGATCCAGCTCGCCACCGGAATCGAGGTGGCCACATATTCCGCGG
ACGTTAGGGATTTTGACGCCGTTAAGACGGCGCTCGATGAGGCCGGGCCC
GTCTACGTGTTGGTGGTCAATCAAGGCGTATTCGTGCCTGGAGAATTGGA
GGCGCAGTCATTGGATGAGGTGAGGCTCATGATTGATGTCAATATCATTG
GAAGTTTCCATATGATCAAAGCTGCATTGCCGTTGATAAAGAAGAGGCAG
AAAGGTGGCGCCGCTTCCATCGCTTTAATGTCCTCTCACGCCGGGCACGT
GGGTATTTATGGTTACACACCTTATTCCGCTAGTAAATTTGGCCTACGGG
GTTTAGCAGAAGCATTACAACCAAAGGTTATTGCAGATGACATTCATGTC
TCCCTTAAATTCCCTCCCGAGACCCAAAATCCCCGGCCAAAAGGAAGAAA
ACAGAAAAAAAACACGGCTCCCCCCCCAATTAAACCGCCCCCTCCTGGGG
GCAATGAAAACTTGATAAATTTTCCAAGAAACCCCCTTAATGGGATTAAA
ACCGGGGACCTTCCCTTGAACCTTGCAATTTTAAAGGGATTCCCCGCCTG
TTCCCAAGAAAACCGCGGGG
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