DY304828

Overview
NameDY304828
Unique NameDY304828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length895
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY304828 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.178e-24
Identity = 63/110 (57.27%), Postives = 75/110 (68.18%), Query Frame = 2 
Query:  467 EATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQDPNDGYQVTXALRVQMEVPRRLHEQLEVQRRLQLRIEAQGKYL 796
            +ATPKTIMR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S      A + D          M++++ N+         +QMEV RRLHEQLEVQR LQLRIEAQGKY+
Sbjct:   59 KATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYM 159

HSP 2 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 3 
Query:  237 GDACLVLTTDPKPRLRWTAELHDRFVDAVTQLGGPD 344
            GD+ LVLTTDPKPRLRWT ELH+RFVDAV QLGGPD
Sbjct:   23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPD 58
The following BLAST results are available for this feature:
BLAST of DY304828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APL_ARATH1.178e-2457.27Myb family transcription factor APL OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YN08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304828 ID=DY304828; Name=DY304828; organism=Citrus clementina; type=EST; length=895bp
CTCTCTCTTTCTAACCTCAGCTCAAAGCCAAAGCTGAAGCTGAATCCTTG
CTGCTGAAGCTCAAAGCCCTCTCCTCCTTTAATCTTCTCTCTTCGTTCGC
TCACTCGTCTTGATTTCTTTTTCGAGATACTGCATTCTTGAGTCTTTGAT
AGATGTACTCGGCGATTCACTCGCTGCCACTGGACGGTGGCCACCCCGAC
TTTCAAGGGGGCCCGCTCGACGGCACCAATCTCCCCGGCGACGCCTGCTT
GGTCTTAACCACCGATCCCAAGCCCCGCCTCCGCTGGACCGCTGAGCTTC
ACGACCGCTTCGTCGATGCTGTCACCCAGCTCGGTGGCCCCGACAGTACC
TGTATTTCATGGGTATGAAATGGGGACATTTCATCAGAAGCATAAGAGGG
GTCTCAACAAGAAGCATAATGTATGGTGCCACGTCGGAAATAAGGGTACA
ATTAGTTGTTTTTATAGAAGCAACACCCAAGACTATCATGAGAACGATGG
GAGTGAAAGGCCTTACCCTTTATCATCTCAAATCACATCTTCAGAAGTAC
CGCTTGGGAAAGCAAGCGTGCAAGGAAACGACAGAGAACTCCAAGGATGT
TTCTTGTGTTGCTGAAAGTCAGGACACTGGTTCATCAACAACATCGTCAA
CCAGAATGGTAGCGCAAGATCCAAATGATGGTTACCAGGTTACTGANGCT
TTGCGAGTACAGATGGAAGTCCCACGAAGGCTTCATGAGCAGCTGGAGGT
TCAGCGACGGCTCCAGCTCCGAATTGAAGCGCAAGGCAAATACCTTACGT
CAATACTTGGAAAAAGCTTGGTAAGCTCCTAATGATCCAGCCAATCTGGG
CTGCCGGGGCTTGAAGCTGCTAGAAAGGAACTTTTCCAACTTTGC
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