DY304835

Overview
NameDY304835
Unique NameDY304835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length915
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_EHRCJ (50S ribosomal protein L25 OS=Ehrlichia canis (strain Jake) GN=rplY PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.402e-14
Identity = 60/208 (28.85%), Postives = 95/208 (45.67%), Query Frame = 3
Query:   96 IQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSP--SRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKLE 713
            I A  RE  G+  +   R  G IPAVV+ +     N D  S   S ++ LS  R    S             T  +++  G           VL   V +   T RI ++ F + D GTE+K++VP++F   + C G+K+GG L  +  +L   C    I   IE+D+S+L  G  + +SD+ + P   ++ K     +  IS+T +E
Sbjct:    9 INASLRENVGTGPARAVRRNGGIPAVVYGK-----NRDSLSVFLSDREFLSKHRSAALS-------------THLIELEIGDKKEY------VLMRDVQKHPVTDRIQHVDFQFIDYGTEIKIEVPLIFTNEQKCIGVKRGGVLNILHRTLSIKCLPNAILQNIEIDLSDLTAGHSIHVSDLNLPPEINVVMKEHNPAIVTISSTSME 192          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_EHRRW (50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplY PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.267e-13
Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = 3
Query:  111 RECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 704
            R   G+  S   R  G IPAVV+ +         RSP    I  ++R+ + S  +S  L     +T  +++  G           VL   + +   T RI ++ F + D GTE+K++VP+VF   + C G+KKGG L  +  +L   C    I   IEVD++NL IG  + +SD+ +     ++ K     L  IS T
Sbjct:   14 RNSVGTGPSRTLRRNGAIPAVVYGK--------HRSPL--SIYLSDREFL-SKYRSAAL-----STHLIELEIGEKKEY------VLMRDIQKHPVTDRIQHVDFQFIDHGTEIKIEVPLVFVNEQRCVGVKKGGVLNILHRTLHIKCLPNAILQSIEVDLANLTIGHSIHVSDLNLPSEVTVVMKEHNPTLVTISGT 189          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_EHRRG (50S ribosomal protein L25 OS=Ehrlichia ruminantium (strain Gardel) GN=rplY PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.267e-13
Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = 3
Query:  111 RECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISAT 704
            R   G+  S   R  G IPAVV+ +         RSP    I  ++R+ + S  +S  L     +T  +++  G           VL   + +   T RI ++ F + D GTE+K++VP+VF   + C G+KKGG L  +  +L   C    I   IEVD++NL IG  + +SD+ +     ++ K     L  IS T
Sbjct:   14 RNSVGTGPSRTLRRNGAIPAVVYGK--------HRSPL--SIYLSDREFL-SKYRSAAL-----STHLIELEIGEKKEY------VLMRDIQKHPVTDRIQHVDFQFIDHGTEIKIEVPLVFVNEQRCVGVKKGGVLNILHRTLHIKCLPNAILQSIEVDLANLTIGHSIHVSDLNLPSEVTVVMKEHNPTLVTISGT 189          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_RHOPT (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplY PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.396e-12
Identity = 56/195 (28.72%), Postives = 95/195 (48.72%), Query Frame = 3
Query:   96 IQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGK--VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNE 674
            ++A  R  +G   +  +R  GR+P V++         D +SP     +S E K++   + +     F +T F           V+LD  K  V+P   H D      +++ F+    G  ++V VP+  KG+E  PG+K+GG    +  +++   PAE+I   IE DVS LDIG  + +SDI +    K +S+++
Sbjct:    7 LKATARPKSGKGAARAERRAGRVPGVIYG--------DNQSPLP---ISVEEKELRLRILAGR---FLTTVF----------DVVLDGKKHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLKGLEVAPGVKRGGTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIALPTGVKSVSRDD 177          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_RHOPA (50S ribosomal protein L25 OS=Rhodopseudomonas palustris GN=rplY PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.396e-12
Identity = 56/195 (28.72%), Postives = 95/195 (48.72%), Query Frame = 3
Query:   96 IQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGK--VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNE 674
            ++A  R  +G   +  +R  GR+P V++         D +SP     +S E K++   + +     F +T F           V+LD  K  V+P   H D      +++ F+    G  ++V VP+  KG+E  PG+K+GG    +  +++   PAE+I   IE DVS LDIG  + +SDI +    K +S+++
Sbjct:    7 LKATARPKSGKGAARAERRAGRVPGVIYG--------DNQSPLP---ISVEEKELRLRILAGR---FLTTVF----------DVVLDGKKHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLKGLEVAPGVKRGGTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIALPTGVKSVSRDD 177          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_EHRCR (50S ribosomal protein L25 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplY PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.381e-12
Identity = 58/208 (27.88%), Postives = 98/208 (47.12%), Query Frame = 3
Query:   96 IQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGK--VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNEKMPLCKISATKLE 713
            I A  R+  G+  S   R  G IPAV++ +        R S S    +S   ++  S  +S  L     +T  +++         +D+ K  VL   V +   T RI ++ F + D GTE+K++VP++F   + C G+K+GG L  +  +L   C  + I   IE+D+S L  G  + +SD+++ P   +  K     +  IS+   E
Sbjct:    9 INASLRKNVGTGPSRALRLSGEIPAVIYGKG-------RDSLS----ISLSNREFVSKYRSAAL-----STHLIELE--------IDNKKEYVLMRDVQKHPVTDRIQHVDFQFIDYGTEIKIEVPLIFTNEQKCIGIKRGGVLNILHRTLSIKCSPKAILQNIEIDLSGLTTGHSIHVSDLKLPPEVNVTMKEHNPAIVTISSASTE 192          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_RHOPS (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplY PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.049e-12
Identity = 56/195 (28.72%), Postives = 92/195 (47.18%), Query Frame = 3
Query:   96 IQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGK--VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNE 674
            ++A  R  +G   +  +R  GR+P V++         D + P     +S E K++   + +     F +T F           V+LD  K  V+P   H D      +++ F+    G  ++V VP+  KG+ES PG+K+GG    +  ++    PAE I   IE DVS LDIG  + +SDI +    K +S+ +
Sbjct:    7 LKATARPKSGKGAARAERRAGRVPGVIYG--------DNQPPLP---ISVEDKELRLRILAGR---FLTTVF----------DVVLDGKKHRVIPRDYHLDPVKDFPIHVDFLRLGAGATIRVSVPLHLKGLESAPGVKRGGTFNIVTHTVDLEAPAESIPQFIEADVSTLDIGVSLHLSDIALPNGVKSVSRED 177          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_ERYLH (50S ribosomal protein L25 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplY PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.049e-12
Identity = 53/181 (29.28%), Postives = 89/181 (49.17%), Query Frame = 3
Query:   93 TIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDI 635
            T+ A  RE  G   S   R +GR+PAV++          +  P+   ++  E K +   +K +    F ++   ++I    G +V     + LP  V     + R  +  F     G +++V VPVVF   E+ PGLKKGG L  +R  L+ +C  + I  +IE+DV+  ++GD + +S+I
Sbjct:    6 TLPAEARERAGKGASRALRREGRVPAVIYG--------GKEEPT---MIHVEEKLL---IKQLMTGHFMNSIVEIEI---GGKTV-----RTLPKDVALHPVSDRPEHADFFRLAKGGKIEVSVPVVFMNEEASPGLKKGGVLNVVRHELELVCENDKIPGEIEIDVTGKEVGDSIHISEI 164          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_RHOP2 (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplY PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.543e-11
Identity = 54/194 (27.84%), Postives = 92/194 (47.42%), Query Frame = 3
Query:   99 QAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLLDSGK--VLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEVHPSWKLLSKNE 674
            +A  R  +G   +  +R  GR+P V++         D + P     +S E K +   +++     F +T F           V+LD  K  V+P   H D      +++ F+   +G  +++ VP+  KG+ES PG+K+GG    +  ++    PA+ I   IE DVS LDIG  + +SDI +    K +S+ +
Sbjct:    8 KATARPKSGKGAARAERRAGRVPGVIYG--------DNKPPLP---ISVEDKDLRLRIQAGR---FLTTIF----------DVVLDGQKHRVIPRDYHLDPVKDFPVHVDFLRLGEGATIRISVPLHLKGLESAPGVKRGGTFNIVTHTVDLEAPADAIPQFIEADVSTLDIGVSLHLSDIALPKGVKSVSRED 177          
BLAST of DY304835 vs. ExPASy Swiss-Prot
Match: RL25_MESSB (50S ribosomal protein L25 OS=Mesorhizobium sp. (strain BNC1) GN=rplY PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.439e-11
Identity = 58/193 (30.05%), Postives = 90/193 (46.63%), Query Frame = 3
Query:   81 SYYHTIQAIPRECTGSRVSARDRSQGRIPAVVFAQDLLDQNTDRRSPSRKQILSTERKQIHSILKSVELPFFCSTTFPLQIRAGSGSSVLL------DSGKVLPIKVHRDEETGRILNLVFVWADDGTELKVDVPVVFKGVESCPGLKKGGYLKSIRTSLKYLCPAEHISPKIEVDVSNLDIGDRVFMSDIEV 641
            SY  T +A  RE  G   +   R  G+IPAV++         D++ P                  S+ LP+     F L+I AG   + +       +  +VLP     D   G  +++ F+     T + V+VPV F   E  PG+K+GG L  +R  +++ CPA  I   IEVD++ LDIGD V +S +++
Sbjct:    4 SYELTAEA--RERVGKGSARAIRRNGKIPAVIYG--------DKQPPL-----------------SITLPY--KEVF-LRIHAGGFRTTVATIDLNGEKIQVLPKDYQLDPVRGFAMHVDFLRVGKNTVVTVNVPVHFINDEKAPGIKRGGVLNIVRHEVEFTCPANAIPDFIEVDLTGLDIGDSVHISAVKL 166          
The following BLAST results are available for this feature:
BLAST of DY304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RL25_EHRCJ7.402e-1428.8550S ribosomal protein L25 OS=Ehrlichia canis (stra... [more]
RL25_EHRRW6.267e-1330.3050S ribosomal protein L25 OS=Ehrlichia ruminantium... [more]
RL25_EHRRG6.267e-1330.3050S ribosomal protein L25 OS=Ehrlichia ruminantium... [more]
RL25_RHOPT1.396e-1228.7250S ribosomal protein L25 OS=Rhodopseudomonas palu... [more]
RL25_RHOPA1.396e-1228.7250S ribosomal protein L25 OS=Rhodopseudomonas palu... [more]
RL25_EHRCR2.381e-1227.8850S ribosomal protein L25 OS=Ehrlichia chaffeensis... [more]
RL25_RHOPS9.049e-1228.7250S ribosomal protein L25 OS=Rhodopseudomonas palu... [more]
RL25_ERYLH9.049e-1229.2850S ribosomal protein L25 OS=Erythrobacter litoral... [more]
RL25_RHOP21.543e-1127.8450S ribosomal protein L25 OS=Rhodopseudomonas palu... [more]
RL25_MESSB3.439e-1130.0550S ribosomal protein L25 OS=Mesorhizobium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YN16RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304835 ID=DY304835; Name=DY304835; organism=Citrus clementina; type=EST; length=915bp
CCGAAACAACCATGACGCTGTGGTGCCGCACTGTTCAAAAGGTGGCACAC
AACTCCAGGACACCGTTTTCACGGACCACTTCGTATTACCACACCATTCA
AGCCATCCCCAGAGAGTGCACCGGCAGCCGAGTCTCAGCCAGGGATCGAT
CCCAGGGTCGAATCCCAGCTGTCGTTTTCGCGCAGGACCTGCTTGATCAA
AATACCGACAGAAGATCACCGTCCAGGAAACAAATCTTATCCACCGAAAG
AAAGCAGATTCACTCCATCCTCAAGTCCGTAGAACTCCCCTTCTTTTGCT
CCACTACTTTCCCGCTGCAGATCCGTGCCGGTTCTGGGTCGTCGGTTTTG
CTTGATTCAGGAAAAGTGCTTCCCATTAAGGTTCATAGAGATGAAGAGAC
TGGGAGAATATTGAATTTGGTTTTTGTCTGGGCTGATGATGGAACGGAGT
TGAAAGTTGATGTGCCTGTTGTCTTTAAAGGAGTAGAGAGCTGTCCTGGT
CTCAAGAAAGGGGGATATTTGAAAAGTATTAGAACCAGCTTAAAATATCT
GTGCCCAGCTGAACATATTTCTCCCAAAATTGAGGTAGATGTCAGCAATC
TCGATATTGGAGATAGAGTATTCATGAGCGACATTGAGGTTCATCCATCC
TGGAAGCTTCTGAGCAAGAATGAGAAAATGCCTCTATGCAAGATCTCGGC
AACTAAGTTGGAAAACCCAGAACCTGCAGTGATGTAGGCACTGAAGTGGA
ACTTGGGCAAGGTTTGCAGATTTATGAGTAGAATACCTAAGAGAAGAAGC
GGAAAAAAAAAATGGGGGGTGGGGGTTAAAAAAAGAAAAAAAGAAAAAGA
GGAATAAACCGGTTTCTTTTACCCGGGCCTTCAGATGTGCTTTTGGTTTC
CGTGTTAAAAAAGGG
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