DY304837
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 1.541e-113 Identity = 114/131 (87.02%), Postives = 122/131 (93.13%), Query Frame = 3 Query: 57 MXXXXQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHL 449 M Q QFRYTQTPSKV+HLRNLPWEC+EEEL++LCK FGKIVNTK NVGANRNQAFVEFADLNQAISMVSYYASSSEPAQ+RGKTVYIQYSNRHEIVNN+SPGDVPGNVLLVT EGVE+ +VSIDVIHL Sbjct: 1 MSSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVESHEVSIDVIHL 131 HSP 2 Score: 196.438 bits (498), Expect = 1.541e-113 Identity = 97/119 (81.51%), Postives = 105/119 (88.24%), Query Frame = 2 Query: 515 VFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGVMQPTIVPDGKKKEFESQVLLASIE 871 VFSAFGFVHKIATFEKAAGFQAL+QFTD ETAS+AR+ALDGRSIPRYLL HVGSC LR+SYSAHTDLNIKFQSHRSRDYTNPYLPVN TA++G MQP + DGKK E +S VLL IE Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGLIE 250 HSP 3 Score: 81.6481 bits (200), Expect = 6.446e-15 Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 2 Query: 515 VFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYL 769 VFSA+G V KIA FEK QALIQ++D TA+ A+ AL+G I G C LR+SYS HTDLN+K S +SRDYT P L Sbjct: 264 VFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCI------YDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL 342
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: PTBP2_ARATH (Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 1.114e-102 Identity = 105/126 (83.33%), Postives = 113/126 (89.68%), Query Frame = 3 Query: 72 QPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHL 449 QPQFRYTQ PSKVLHLRNLPWEC EEEL+EL KPFG +VNTKCNVGANRNQAF+EF DLNQAI M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ DV GNVLLVTIEG +A VSIDV+HL Sbjct: 7 QPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGDDARMVSIDVLHL 132 HSP 2 Score: 179.104 bits (453), Expect = 1.114e-102 Identity = 89/119 (74.79%), Postives = 100/119 (84.03%), Query Frame = 2 Query: 515 VFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGVMQPTIVPDGKKKEFESQVLLASIE 871 VFSAFGFVHKI TFEK AG+QAL+QFTDAETA++A+ ALDGRSIPRYLL E VG C L+I+YSAHTDL +KFQSHRSRDYTNPYLPV P+AI+ Q + DGKK E ES VLLASIE Sbjct: 133 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIE 251 HSP 3 Score: 83.1889 bits (204), Expect = 2.215e-15 Identity = 49/98 (50.00%), Postives = 60/98 (61.22%), Query Frame = 2 Query: 515 VFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGVMQP 808 VF+AFG V KIA F+K G QALIQ++D +TA A+ AL+G I G C L I+YS HTDL+IK + RSRDYT P PV P + V P Sbjct: 265 VFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCI------YDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV-PMPQQPVQNP 355
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 3.300e-30 Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 3 Query: 84 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSI 434 R T PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E + A +MV+YY S + +RG+ +YIQ+SN E+ + SP L + V++G++++ Sbjct: 51 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMSTEEAANTMVNYYTSVA--PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLAL 163 HSP 2 Score: 73.9442 bits (180), Expect = 3.300e-30 Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2 Query: 512 QVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 772 Q+FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP Sbjct: 201 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 280
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.314e-30 Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 2 Query: 512 QVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 772 QVFS +GFV K+ TF+K+AGFQALIQ+ + A+SAR AL GR+I + G C L I +S +L + + + RSRDYTNP LP Sbjct: 119 QVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNI-------YDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198 HSP 2 Score: 67.781 bits (164), Expect = 4.314e-30 Identity = 41/119 (34.45%), Postives = 73/119 (61.34%), Query Frame = 3 Query: 102 SKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIV----NNKSPGDVPGNVLLVTIEGVEAGDVSIDVIH 446 SKV+H+RN+ E E +L++L +PFG I TK + +NQA ++ D++ A+S + ++ ++ +P +RG+ VY+Q+S+ E+ N D P +LLVTI + +++DV+H Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFF-TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLH 118
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: PTBP1_MOUSE (Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 9.494e-30 Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = 3 Query: 84 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSI 434 R PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E A +MV+YY S + +RG+ +YIQ+SN E+ + SP V L + V++G++++ Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVA--PVLRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLAL 163 HSP 2 Score: 73.9442 bits (180), Expect = 9.494e-30 Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2 Query: 512 QVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 772 Q+FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP Sbjct: 201 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 280
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.609e-29 Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 3 Query: 84 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSI 434 R PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E A +MV+YY S + +RG+ +YIQ+SN E+ + SP L + V++G++++ Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMHTEEAANTMVNYYTSVT--PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLAL 164 HSP 2 Score: 73.9442 bits (180), Expect = 1.609e-29 Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2 Query: 512 QVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 772 Q+FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP Sbjct: 202 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 281
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.094e-29 Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 3 Query: 84 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSI 434 R PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E A +MV+YY S + +RG+ +YIQ+SN E+ + SP L + V++G++++ Sbjct: 52 RSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVT--PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLAL 164 HSP 2 Score: 73.9442 bits (180), Expect = 2.094e-29 Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2 Query: 512 QVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 772 Q+FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP Sbjct: 202 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 281
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.095e-29 Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 3 Query: 84 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSI 434 R PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E A +MV+YY S + +RG+ +YIQ+SN E+ + SP L + V++G++++ Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVT--PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLAL 164 HSP 2 Score: 73.9442 bits (180), Expect = 2.095e-29 Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 2 Query: 512 QVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 772 Q+FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP Sbjct: 202 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 281
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.021e-28 Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 3 Query: 96 TPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSI 434 +PS+VLHLR +P + E E++ L PFGK+ N G ++QAF+E A A++M++YY + +R + VYIQYSN E+ + P L + V++G++S+ Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVTMINYYTPVT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSL 135 HSP 2 Score: 70.4774 bits (171), Expect = 1.021e-28 Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 2 Query: 512 QVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGVMQPTIVP 820 Q+FS FG V KI TF K FQAL+Q+ D A A+ ALDG++I + C LRI +S T LN+K+ + +SRD+T LP G QP++ P Sbjct: 171 QIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPT------GDGQPSLEP 260
BLAST of DY304837 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.021e-28 Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 3 Query: 96 TPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSI 434 +PS+VLHLR +P + E E++ L PFGK+ N G ++QAF+E A A++M++YY + +R + VYIQYSN E+ + P L + V++G++S+ Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVTMINYYTPVT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSL 135 HSP 2 Score: 70.4774 bits (171), Expect = 1.021e-28 Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 2 Query: 512 QVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGVMQPTIVP 820 Q+FS FG V KI TF K FQAL+Q+ D A A+ ALDG++I + C LRI +S T LN+K+ + +SRD+T LP G QP++ P Sbjct: 171 QIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPT------GDGQPSLEP 260 The following BLAST results are available for this feature:
BLAST of DY304837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY304837 ID=DY304837; Name=DY304837; organism=Citrus clementina; type=EST; length=894bpback to top |