DY304843

Overview
NameDY304843
Unique NameDY304843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUM1_ARATH (Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 6.349e-84
Identity = 153/167 (91.62%), Postives = 158/167 (94.61%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSLQNF+IGGERERMPEPIVRAFG+LKKCAAKVNMEYGLDP IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG KRGEK VHPNDHVNRSQSSNDTFPTVMHIAAA   NSRLIP+LK LH++L SKS EFKDIVKIGRTHTQDATP
Sbjct:   56 RSLQNFEIGGERERMPEPIVRAFGVLKKCAAKVNMEYGLDPTIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGRKRGEKCVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPSLKTLHSTLESKSFEFKDIVKIGRTHTQDATP 222          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUM2_ARATH (Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 1.847e-83
Identity = 152/167 (91.02%), Postives = 159/167 (95.21%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSLQNF+IGG+RERMPEPIVRAFG+LKKCAAKVNMEYGLDP IG+AIM+AAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAA    SRLIP+LK LH+SL SKS EFKDIVKIGRTHTQDATP
Sbjct:   63 RSLQNFEIGGDRERMPEPIVRAFGVLKKCAAKVNMEYGLDPMIGEAIMEAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAATEITSRLIPSLKNLHSSLESKSFEFKDIVKIGRTHTQDATP 229          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMH_MACFA (Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.123e-63
Identity = 118/168 (70.24%), Postives = 138/168 (82.14%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN +YGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G KI VHPNDHVN+SQSSNDTFPT MHIAAA+  +  L+P L+ LH++L +KS EF  I+KIGRTHTQDA P
Sbjct:   74 RSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVP 241          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMH_HUMAN (Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 2.123e-63
Identity = 118/168 (70.24%), Postives = 138/168 (82.14%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN +YGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G KI VHPNDHVN+SQSSNDTFPT MHIAAA+  +  L+P L+ LH++L +KS EF  I+KIGRTHTQDA P
Sbjct:   74 RSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVP 241          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMH_RAT (Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.178e-63
Identity = 117/168 (69.64%), Postives = 138/168 (82.14%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN EYGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G +K VHPNDHVN+SQSSNDTFPT MHIAAA+  +  L+P L+ LH++L +KS EF  ++KIGRTHTQDA P
Sbjct:   71 RSTMNFKIGGATERMPIPVIKAFGILKRAAAEVNQEYGLDPKIASAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAALEVHQVLLPGLQKLHDALSAKSKEFAQVIKIGRTHTQDAVP 238          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMH_MOUSE (Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.054e-62
Identity = 117/168 (69.64%), Postives = 138/168 (82.14%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN EYGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G +K VHPNDHVN+SQSSNDTFPT MHIAAA+  +  L+P L+ LH++L +KS EF  ++KIGRTHTQDA P
Sbjct:   71 RSTMNFKIGGATERMPIPVIQAFGILKRAAAEVNQEYGLDPKIASAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHKVLLPGLQKLHDALSAKSKEFAQVIKIGRTHTQDAVP 238          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMH_RHIOR (Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.348e-62
Identity = 116/168 (69.05%), Postives = 135/168 (80.36%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSLQNFDIGG  ERMPEP++RAFG+LKK AA VNM YGLDP +G+AI +AA EV +G L DHFPLVVWQTGSGTQ+ MN NEVI+NRA E+LG + G K  VHPNDHVN SQSSNDTFPT MH+AA +  + RLIP L  L ++L +KS EF+ I+KIGRTH QDATP
Sbjct:   57 RSLQNFDIGGPTERMPEPLIRAFGVLKKAAATVNMTYGLDPKVGEAIQKAADEVIDGSLIDHFPLVVWQTGSGTQTKMNVNEVISNRAIELLGGELGSKAPVHPNDHVNMSQSSNDTFPTAMHVAAVVEIHGRLIPALTTLRDALQAKSAEFEHIIKIGRTHLQDATP 224          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMH_PIG (Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.348e-62
Identity = 117/168 (69.64%), Postives = 138/168 (82.14%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN +YGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G +K VHPNDHVN+SQSSNDTFPT MHIAAA+  +  L+P L+ LH++L +KS EF  I+KIGRTHTQDA P
Sbjct:   30 RSTMNFKIGGVTERMPIPVLKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALDAKSREFAQIIKIGRTHTQDAVP 197          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMH_DANRE (Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.427e-61
Identity = 116/168 (69.05%), Postives = 135/168 (80.36%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RS  NF IGG  ERMP  ++RAFGILKK AA+VN +YGLDP I  AIM+AA EV  GKL+DHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG K G K  VHPNDHVN+SQSSNDTFPT MHIAAA   +  L+P L+ LH++L +K+ +FKDI+KIGRTHTQDA P
Sbjct:   73 RSTMNFRIGGVTERMPIQVIRAFGILKKAAAEVNKDYGLDPKIADAIMKAADEVESGKLDDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKSQSSNDTFPTAMHIAAAKEVHEVLLPGLQTLHDALAAKAEQFKDIIKIGRTHTQDAVP 240          
BLAST of DY304843 vs. ExPASy Swiss-Prot
Match: FUMH_SCHPO (Fumarate hydratase, mitochondrial OS=Schizosaccharomyces pombe GN=fum1 PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 7.552e-61
Identity = 116/168 (69.05%), Postives = 139/168 (82.74%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMGTNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 501
            RSLQNF IGGE+ER+P P+VRAFG+LK+ AA VN E+GLDP +  AI QAAQEV +G+L+D+FPLVV+QTGSGTQSNMN+NEVIANRA EILG   G +K VHPNDHVN SQSSNDTFPTVMHIA+ +  ++ L+P +K LH +L  K  EFK+I+KIGRTH QDATP
Sbjct:   82 RSLQNFRIGGEKERLPLPLVRAFGVLKRAAASVNREFGLDPKLADAIEQAAQEVIDGRLDDNFPLVVFQTGSGTQSNMNSNEVIANRAIEILGGTLGSKKPVHPNDHVNMSQSSNDTFPTVMHIASVLQIHTHLLPAMKHLHRALKGKEEEFKNIIKIGRTHMQDATP 249          
The following BLAST results are available for this feature:
BLAST of DY304843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUM1_ARATH6.349e-8491.62Fumarate hydratase 1, mitochondrial OS=Arabidopsis... [more]
FUM2_ARATH1.847e-8391.02Fumarate hydratase 2, chloroplastic OS=Arabidopsis... [more]
FUMH_MACFA2.123e-6370.24Fumarate hydratase, mitochondrial OS=Macaca fascic... [more]
FUMH_HUMAN2.123e-6370.24Fumarate hydratase, mitochondrial OS=Homo sapiens ... [more]
FUMH_RAT6.178e-6369.64Fumarate hydratase, mitochondrial OS=Rattus norveg... [more]
FUMH_MOUSE1.054e-6269.64Fumarate hydratase, mitochondrial OS=Mus musculus ... [more]
FUMH_RHIOR2.348e-6269.05Fumarate hydratase, mitochondrial OS=Rhizopus oryz... [more]
FUMH_PIG2.348e-6269.64Fumarate hydratase, mitochondrial OS=Sus scrofa GN... [more]
FUMH_DANRE4.427e-6169.05Fumarate hydratase, mitochondrial OS=Danio rerio G... [more]
FUMH_SCHPO7.552e-6169.05Fumarate hydratase, mitochondrial OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YO01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304843 ID=DY304843; Name=DY304843; organism=Citrus clementina; type=EST; length=563bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGGAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTCAAGGATATTGTTAAAATTGGGCGCACTCACACTCAAGATGCGACCCC
CTTTGACTCTTGGGCAAGAATTTAGTGGCTATACCAACCCAAATTGAAAT
AAGGCCATTGACC
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