DY304846

Overview
NameDY304846
Unique NameDY304846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: SK2L2_MOUSE (Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.664e-75
Identity = 126/167 (75.45%), Postives = 143/167 (85.63%), Query Frame = 1
Query:  307 RIVVHTLETHEGCTHEVAIPPCHEYAPLVQSSQEPAKQYTFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGV 807
            R+ V ++ET EGCTHEVA+P   +Y PL     + AK+Y FILD FQ+EAI C+DN QSVLVSAHTSAGKTV AEYAIAL+L+ KQRVI+T+PIKALSNQKYRE  EEF DVGL+TGDVTINPTASCL+MTTEILR+MLYRGSEVMREV WVIFDEIHY+RD ERGV
Sbjct:   96 RVKVQSVETVEGCTHEVALPADEDYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGV 262          

HSP 2 Score: 48.521 bits (114), Expect = 3.664e-75
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 2
Query:  794 KRGVFVWEKTAIPPPEHLHYVFLSATIPNAPQFPE 898
            +RGV VWE+T I  P+++HYVFLSATIPNA QF E
Sbjct:  259 ERGV-VWEETIILLPDNVHYVFLSATIPNARQFAE 292          
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: SK2L2_HUMAN (Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 4.779e-75
Identity = 126/167 (75.45%), Postives = 143/167 (85.63%), Query Frame = 1
Query:  307 RIVVHTLETHEGCTHEVAIPPCHEYAPLVQSSQEPAKQYTFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGV 807
            R+ V ++ET EGCTHEVA+P   +Y PL     + AK+Y FILD FQ+EAI C+DN QSVLVSAHTSAGKTV AEYAIAL+L+ KQRVI+T+PIKALSNQKYRE  EEF DVGL+TGDVTINPTASCL+MTTEILR+MLYRGSEVMREV WVIFDEIHY+RD ERGV
Sbjct:   98 RVKVQSVETVEGCTHEVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGV 264          

HSP 2 Score: 48.521 bits (114), Expect = 4.779e-75
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 2
Query:  794 KRGVFVWEKTAIPPPEHLHYVFLSATIPNAPQFPE 898
            +RGV VWE+T I  P+++HYVFLSATIPNA QF E
Sbjct:  261 ERGV-VWEETIILLPDNVHYVFLSATIPNARQFAE 294          
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: MTR4_CAEEL (mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.379e-71
Identity = 136/212 (64.15%), Postives = 160/212 (75.47%), Query Frame = 1
Query:  184 DESSKKRSH--EEDDTEHAKKPKXXXXXXXXXXXXXXXXXXXXRIVVHTLET-HEGCTHEVAIPPCHEYAPLVQSS-QEPAKQYTFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGV 807
            DE++ KR+   EE++ E A+                        I+VHT+ T +E CTHEVAIPP  E+A L ++S  EPAK Y F LD FQK+AILCIDN QSVLVSAHTSAGKTVVA YAIA  L+ KQRVIYT+PIKALSNQKYRE  EEF DVGL+TGDVT+NP ASCL+MTTEILR+MLYRGSE+M+EVGWV++DEIHY+RDKERGV
Sbjct:   60 DEATSKRARVEEEEEVEEARMEN---------------------IIVHTIRTDNENCTHEVAIPPNAEFAELRENSGTEPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIKALSNQKYRELEEEFKDVGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGV 250          

HSP 2 Score: 36.5798 bits (83), Expect = 1.379e-71
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 2
Query:  794 KRGVFVWEKTAIPPPEHLHYVFLSATIPNAPQFPE 898
            +RGV VWE+T I   +++   FLSATIPNA QF +
Sbjct:  247 ERGV-VWEETIILMSKNIKQAFLSATIPNARQFAQ 280          
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: MTR4_YEAST (ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae GN=MTR4 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.631e-66
Identity = 114/154 (74.03%), Postives = 130/154 (84.42%), Query Frame = 1
Query:  349 HEVAIPPCHEYAPLVQSSQ-EPAKQYTFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGV 807
            H+VA+PP ++Y P+ +  +   A+ Y F LDPFQ  AI CID  +SVLVSAHTSAGKTVVAEYAIA SLKNKQRVIYT+PIKALSNQKYRE   EF DVGL+TGD+TINP A CL+MTTEILR+MLYRGSEVMREV WVIFDE+HY+RDKERGV
Sbjct:  121 HQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGV 274          

HSP 2 Score: 43.5134 bits (101), Expect = 1.631e-66
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 2
Query:  794 KRGVFVWEKTAIPPPEHLHYVFLSATIPNAPQFPE 898
            +RGV VWE+T I  P+ + YVFLSATIPNA +F E
Sbjct:  271 ERGV-VWEETIILLPDKVRYVFLSATIPNAMEFAE 304          
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: YDVG_SCHPO (Uncharacterized helicase C6F12.16c OS=Schizosaccharomyces pombe GN=SPAC6F12.16c PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.716e-66
Identity = 114/163 (69.94%), Postives = 134/163 (82.21%), Query Frame = 1
Query:  325 LETHEGCTHEVAIPPCHEYAPLVQ--SSQEPAKQYTFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGV 807
            +E      H+V+IPP ++Y P+ +  S   PA+ Y F LDPFQ  +I CI+  +SVLVSAHTSAGKTVVAEYA+A SL++KQRVIYT+PIKALSNQKYRE   EF DVGL+TGDVTINP A+CL+MTTEILR+MLYRGSEVMREV WVIFDEIHY+RDKERGV
Sbjct:  161 VELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGV 323          

HSP 2 Score: 45.0542 bits (105), Expect = 4.716e-66
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 2
Query:  794 KRGVFVWEKTAIPPPEHLHYVFLSATIPNAPQFPE 898
            +RGV VWE+T I  P+  H+VFLSATIPNA QF E
Sbjct:  320 ERGV-VWEETIILLPDKSHFVFLSATIPNAMQFAE 353          
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: YE02_SCHPO (Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe GN=SPAC17H9.02 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.653e-62
Identity = 106/155 (68.39%), Postives = 129/155 (83.23%), Query Frame = 1
Query:  349 HEVAIPPCHEYAPLVQS--SQEPAKQYTFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGV 807
            H+V +P  ++Y PL +   S  PAK Y F LDPFQ  AI C++ ++SVLVSAHTSAGKTV+AEYAIA +LKN+QRVIYT+PIK+LSNQKYRE   EF DVGL+TGDV+INP+ASCLIMTTEILR MLY+ SE+M E+ WVIFDE+HY+RDK+RGV
Sbjct:   96 HKVVVPDDYDYIPLNKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGV 250          

HSP 2 Score: 39.6614 bits (91), Expect = 6.653e-62
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 2
Query:  797 RGVFVWEKTAIPPPEHLHYVFLSATIPNAPQF 892
            RGV VWE+T I  P+ + ++FLSAT+PNA QF
Sbjct:  248 RGV-VWEETLILLPDAIRFIFLSATLPNALQF 278          
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: SKIV2_HUMAN (Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.708e-50
Identity = 89/134 (66.42%), Postives = 110/134 (82.09%), Query Frame = 1
Query:  406 EPAKQYTFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGV 807
            +PA Q+ F  D FQK+AIL ++   SV V+AHTSAGKTVVAEYAIAL+ K+  R IYT+PIKALSNQK+R+F   F DVGL+TGDV ++P ASCLIMTTEILR+MLY GS+V+R++ WVIFDE+HY+ D ERGV
Sbjct:  302 QPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGV 435          

HSP 2 Score: 39.2762 bits (90), Expect = 3.708e-50
Identity = 17/37 (45.95%), Postives = 27/37 (72.97%), Query Frame = 2
Query:  788 EIKRGVFVWEKTAIPPPEHLHYVFLSATIPNAPQFPE 898
            +++RGV VWE+  I  P+H+  + LSAT+PNA +F +
Sbjct:  430 DVERGV-VWEEVLIMLPDHVSIILLSATVPNALEFAD 465          
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: SKI2_YEAST (Antiviral helicase SKI2 OS=Saccharomyces cerevisiae GN=SKI2 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 4.368e-48
Identity = 87/135 (64.44%), Postives = 112/135 (82.96%), Query Frame = 1
Query:  409 PAKQYTFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDV--GLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGV 807
            PA+ + F LD FQKEA+  ++   SV V+AHTSAGKTVVAEYAIA++ +N  + IYT+PIKALSNQK+R+F E F DV  GLITGDV INP A+CLIMTTEILR+MLYRG++++R+V +VIFDE+HY+ D++RGV
Sbjct:  322 PARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGV 456          

HSP 2 Score: 36.5798 bits (83), Expect = 4.368e-48
Identity = 16/32 (50.00%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  797 RGVFVWEKTAIPPPEHLHYVFLSATIPNAPQF 892
            RGV VWE+  I  P+H+ ++ LSAT+PN  +F
Sbjct:  454 RGV-VWEEVIIMLPQHVKFILLSATVPNTYEF 484          
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: YJV3_SCHPO (Uncharacterized helicase C550.03c OS=Schizosaccharomyces pombe GN=SPCC550.03c PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.261e-47
Identity = 90/154 (58.44%), Postives = 116/154 (75.32%), Query Frame = 1
Query:  376 EYAPLVQSSQ----------EPAKQYTFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERGV 807
            +YA +V SS           E A  + F LD FQKEAI  ++   SV V+AHTSAGKTVVAEYAIAL+ K+  + IYT+PIKALSNQK+R+F  +F DVG++TGDV +NP  SCL+MTTEILR+MLYRG++++R+V +VIFDE+HY+ D ERGV
Sbjct:  252 DYAHVVDSSAPIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGV 405          

HSP 2 Score: 36.1946 bits (82), Expect = 1.261e-47
Identity = 16/35 (45.71%), Postives = 24/35 (68.57%), Query Frame = 2
Query:  788 EIKRGVFVWEKTAIPPPEHLHYVFLSATIPNAPQF 892
            +++RGV VWE+  I  P H+  + LSAT+PN  +F
Sbjct:  400 DLERGV-VWEEVIIMLPPHVTLILLSATVPNTKEF 433          
BLAST of DY304846 vs. ExPASy Swiss-Prot
Match: HELY_MYCTU (Probable helicase helY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.631e-29
Identity = 58/128 (45.31%), Postives = 86/128 (67.19%), Query Frame = 1
Query:  427 FILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEF--HDVGLITGDVTINPTASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYLRDKERG 804
            F LD FQ+ A   ++    VLV A T AGKTVV E+A+ L+L    +  YTTP+KALSNQK+ + +  +    +GL+TGD+++N  A  ++MTTE+LRNMLY  S  ++ + +V+ DE+H+L D+ RG
Sbjct:   16 FSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRG 143          

HSP 2 Score: 29.261 bits (64), Expect = 6.631e-29
Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  809 VWEKTAIPPPEHLHYVFLSATIPNAPQF 892
            VWE+  +  P+ +  V LSAT+ NA +F
Sbjct:  145 VWEEVILQLPDDVRVVSLSATVSNAEEF 172          
The following BLAST results are available for this feature:
BLAST of DY304846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SK2L2_MOUSE3.664e-7575.45Superkiller viralicidic activity 2-like 2 OS=Mus m... [more]
SK2L2_HUMAN4.779e-7575.45Superkiller viralicidic activity 2-like 2 OS=Homo ... [more]
MTR4_CAEEL1.379e-7164.15mRNA transport homolog 4 OS=Caenorhabditis elegans... [more]
MTR4_YEAST1.631e-6674.03ATP-dependent RNA helicase DOB1 OS=Saccharomyces c... [more]
YDVG_SCHPO4.716e-6669.94Uncharacterized helicase C6F12.16c OS=Schizosaccha... [more]
YE02_SCHPO6.653e-6268.39Uncharacterized helicase C17H9.02 OS=Schizosacchar... [more]
SKIV2_HUMAN3.708e-5066.42Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2[more]
SKI2_YEAST4.368e-4864.44Antiviral helicase SKI2 OS=Saccharomyces cerevisia... [more]
YJV3_SCHPO1.261e-4758.44Uncharacterized helicase C550.03c OS=Schizosacchar... [more]
HELY_MYCTU6.631e-2945.31Probable helicase helY OS=Mycobacterium tuberculos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YO04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304846 ID=DY304846; Name=DY304846; organism=Citrus clementina; type=EST; length=933bp
TTTTGAACATATTTTGATACTCAATTTGTATATTTAACAATCTAAATGTG
GGACTGAACTGAAATAATGGCGGATATAGATAGTTTATTTGATTGTTTTG
AAAAATCTGCAGATAACGAGGCCGCTGTACAATTTCCTATTGTTAAAACT
GAAGAAACCCGGCCGAATGAAGATAAAGTAACTGACGAGTCTTCCAAAAA
GCGCTCCCATGAAGAAGACGACACGGAACATGCAAAAAAGCCTAAACAAG
ACGACAGTCAAAACGATGATCTTCTCGAAGATTTGAACTTGGATTTACTG
GATTCGCGAATTGTCGTCCATACATTGGAGACTCATGAAGGTTGCACCCA
CGAAGTCGCAATACCTCCGTGCCACGAGTACGCGCCGCTGGTGCAGAGCT
CGCAGGAGCCTGCCAAACAGTATACCTTCATTCTGGATCCTTTCCAAAAG
GAGGCTATACTTTGTATAGATAATCTGCAGTCAGTACTGGTATCAGCTCA
CACTTCTGCCGGTAAAACTGTGGTCGCTGAGTATGCCATAGCTCTGTCTC
TGAAAAATAAACAGAGAGTGATTTACACTACGCCTATTAAGGCACTGTCC
AATCAGAAGTACAGGGAGTTTTCTGAGGAGTTCCATGATGTGGGGCTGAT
CACCGGAGATGTCACTATTAACCCAACAGCATCATGCCTTATCATGACAA
CTGAGATTCTCAGAAACATGTTATACAGAGGTTCAGAGGTTATGCGGGAA
GTTGGCTGGGTGATATTTGATGAGATACACTACCTGAGAGATAAAGAGAG
GGGTGTTTGTTTGGGAGAAAACCGCTATTCCTCCACCTGAACACCTCCAC
TACGTGTTCCTGTCGGCCACCATACCTAACGCGCCCCAATTTCCGGAAGG
GGGTGGGCCGGCCTACCCTCCCACCTTGGTCCC
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