DY304854

Overview
NameDY304854
Unique NameDY304854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.988e-20
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  220 SSRKLPIVVFIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNIAHHLAVRLGGGGGFEELAPVRVRGYVPLAPFFGGVARTKSE 648
            ++   P+++F HGG F   S +     + C R       +VV+++YR APEHR P A +D ++A+KW+  Q       D +        RVF+ GDSSGGNIAHH+AVR    G       V+V G + L   FGG  RT+SE
Sbjct:  109 AAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ-------ARVFLSGDSSGGNIAHHVAVRAADEG-------VKVCGNILLNAMFGGTERTESE 237          
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.802e-20
Identity = 60/185 (32.43%), Postives = 94/185 (50.81%), Query Frame = 1
Query:  103 IDFDYPLDKNDGSVLIKDCQYDEKHQLHLRMYKTPSI---ITSSRKLPIVVFIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNIAHHLAVRLGGGGGFEELAPVRVRGYVPLAPFFGGVARTKSE 648
            +D  +  D  D +  +    Y     LH   + T  +   ++++  +P+++F HGG F   S         C RL T    +VV++DYR +PEHR P A +D ++A+ W++ +   +   D   +       V++ GDSSGGNIAH++AVR    G       V+V G + L P FGG  RT+SE
Sbjct:   60 LDGVFSFDHVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY-------VYLAGDSSGGNIAHNVAVRATNEG-------VKVLGNILLHPMFGGQERTQSE 230          
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.418e-17
Identity = 67/205 (32.68%), Postives = 97/205 (47.32%), Query Frame = 1
Query:   76 DGTVLR--SNNIDFDYPLDKND-GSVLIKDCQYDEKHQLHLRMYK------TPSII-----TSSRKLPIVVFIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNIAHHLAVRLGGGGGFEELAPVRVRGYVPLAPFFGGVARTKSE 648
            DGT  R  +  +D   P + N    V   D   D +  L  R+Y+      +PSI           +P++VF HGG F   S         C RL     A+VV+++YR APE+R P A +D ++ +KW+   +      D +        R+F+ GDSSGGNI H++AVR          + + V G + L P FGG  RT+SE
Sbjct:   38 DGTFNRHLAEFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSSWLRSKKDSK-------VRIFLAGDSSGGNIVHNVAVR-------AVESRIDVLGNILLNPMFGGTERTESE 228          
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.048e-16
Identity = 49/139 (35.25%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  232 LPIVVFIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNIAHHLAVRLGGGGGFEELAPVRVRGYVPLAPFFGGVARTKSE 648
            +P+++F HGG F   S         C RL      +VV+++YR APE+  P A +D + A+ W+  ++  +   D +         +F+ GDSSGGNIAH++A+R G  G       + V G + L P FGG  RT+SE
Sbjct:  106 VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRSWLKSKKDSK-------VHIFLAGDSSGGNIAHNVALRAGESG-------IDVLGNILLNPMFGGNERTESE 230          
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.284e-14
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  247 FIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNIAHHLAVRL 549
            +IHGGG+CVGS A         R A  L+ +VV+ +YRLAPE+  P   ED + A+KW   Q + EK       + V+ +RV V GDS+GGN+A  +A +L
Sbjct:  108 YIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDVLEK-------YGVDPERVGVSGDSAGGNLAAAVAQQL 201          
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: AAAD_BOVIN (Arylacetamide deacetylase OS=Bos taurus GN=AADAC PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.052e-12
Identity = 44/140 (31.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  130 NDGSVLIKDCQYDEKHQLHLRMYKTPSIITSSRKLPIVVFIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNIAHHLAVRL 549
            +D ++++KD  +++   + +R+Y       S R+   + +IHGGG+C GS  + S        A  L+A+V++ +YRLAP++  P   ED ++A+KW  D    E        + V+  R+ + GDS+GGN+A  +A +L
Sbjct:   75 SDENIIVKDTTFND---IPVRIYVPQQKTKSLRRG--LFYIHGGGWCFGSNDYYSYDLLSRWTAERLDAVVISTNYRLAPKYHFPVQFEDVYTALKWFLDPQNLES-------YGVDPGRIGISGDSAGGNLAAAVAQQL 202          
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: ADCL2_HUMAN (Arylacetamide deacetylase-like 2 OS=Homo sapiens GN=AADACL2 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  112 DYPLDKNDGSVLIKDCQYDEKHQLHLRMYKTPSIITSSRKLPIVVFIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNIA 528
            DY    +D  + + D  + +   + +R+Y  P   + +R+  ++ F HGGGFC GS    +        A  L+A+VV +DYRLAP+H  PA  ED  +A+K+     L EK++     + V+  R+ + GDSSGGN+A
Sbjct:   69 DYTQPLSDEYITVTDTTFVD---IPVRLY-LPKRKSETRRRAVIYF-HGGGFCFGSSKQRAFDFLNRWTANTLDAVVVGVDYRLAPQHHFPAQFEDGLAAVKFF----LLEKILTK---YGVDPTRICIAGDSSGGNLA 195          
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: AAAD_RAT (Arylacetamide deacetylase OS=Rattus norvegicus GN=Aadac PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.163e-11
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  247 FIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNI 525
            FIHGGG+C+GS A+        R A  L+A+VV+ DY LAP++  P   ED + +++W   + + EK       + V+  RV V GDS+GGN+
Sbjct:  108 FIHGGGWCLGSAAYFMYDTLSRRTAHRLDAVVVSTDYGLAPKYHFPKQFEDVYHSLRWFLQEDILEK-------YGVDPRRVGVSGDSAGGNL 193          
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: AAAD_MOUSE (Arylacetamide deacetylase OS=Mus musculus GN=Aadac PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.519e-11
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  247 FIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNIA 528
            +IHGGG+C+GS A  S        A  L+A+VV+ DY LAP+H  P   ED + +++W   + + EK       + V+  RV V GDS+GGN+A
Sbjct:  108 YIHGGGWCLGSAAHFSYDTLSRWTAHKLDAVVVSTDYGLAPKHHFPRQFEDVYRSLRWFLQEDVLEK-------YGVDPRRVGVSGDSAGGNLA 194          
BLAST of DY304854 vs. ExPASy Swiss-Prot
Match: AAAD_HUMAN (Arylacetamide deacetylase OS=Homo sapiens GN=AADAC PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 7.538e-11
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  247 FIHGGGFCVGSRAWPSSHNCCMRLATGLNALVVALDYRLAPEHRLPAAMEDAFSAMKWLQDQALSEKVVDDEWFHDVEFDRVFVLGDSSGGNIA 528
            +IHGGG+CVGS A           A  L+A+VV+ +YRLAP++  P   ED ++A++W     L +KV+     + V  +R+ + GDS+GGN+A
Sbjct:  109 YIHGGGWCVGSAALSGYDLLSRWTADRLDAVVVSTNYRLAPKYHFPIQFEDVYNALRWF----LRKKVLAK---YGVNPERIGISGDSAGGNLA 195          
The following BLAST results are available for this feature:
BLAST of DY304854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GID1_ORYSJ3.988e-2038.46Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH6.802e-2032.43Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH1.418e-1732.68Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH2.048e-1635.25Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
AAAD_RABIT7.284e-1442.57Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
AAAD_BOVIN1.052e-1231.43Arylacetamide deacetylase OS=Bos taurus GN=AADAC P... [more]
ADCL2_HUMAN1.374e-1234.53Arylacetamide deacetylase-like 2 OS=Homo sapiens G... [more]
AAAD_RAT1.163e-1139.78Arylacetamide deacetylase OS=Rattus norvegicus GN=... [more]
AAAD_MOUSE1.519e-1140.43Arylacetamide deacetylase OS=Mus musculus GN=Aadac... [more]
AAAD_HUMAN7.538e-1139.36Arylacetamide deacetylase OS=Homo sapiens GN=AADAC... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ9YO13RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304854 ID=DY304854; Name=DY304854; organism=Citrus clementina; type=EST; length=904bp
AAGAAAAGACAAATGGGTTCTCTTGATCCTCAAGTTATTGAAGACTTGGG
GAAAGGGGTCATTCAACTACTGAGCGATGGCACCGTACTGAGGTCCAACA
ATATAGATTTTGATTACCCTTTAGACAAGAATGACGGCTCTGTCTTGATC
AAAGACTGTCAATACGATGAAAAACATCAACTGCATCTCCGTATGTACAA
AACCCCTTCAATAATAACATCCTCTAGGAAGCTTCCTATTGTCGTATTCA
TTCATGGGGGAGGCTTTTGCGTCGGCTCACGTGCATGGCCAAGCTCTCAC
AACTGTTGCATGCGCCTCGCGACCGGGCTCAACGCCCTTGTTGTTGCCCT
AGACTACAGGCTGGCGCCGGAGCACCGTCTCCCGGCTGCCATGGAAGATG
CTTTTAGCGCCATGAAATGGCTCCAAGATCAGGCTCTGAGTGAGAAGGTC
GTTGACGATGAATGGTTCCATGATGTTGAGTTTGACAGAGTCTTTGTGCT
GGGAGATTCCTCCGGGGGGAATATTGCTCATCATCTGGCAGTTCGGCTCG
GCGGCGGCGGCGGTTTTGAAGAGTTGGCGCCTGTTAGGGTTCGAGGGTAT
GTGCCGTTGGCGCCCTTCTTTGGTGGGGTGGCAAGGACCAAGTCGGAAGC
CGGGGCAAGTGAAGAAAATTTGACTCCTCGTATACTCCAACGCCTTTTGG
AGGCCAATCTTACCCATTTGGAGTTACTAAAAAACCCCTTCAAAATTCCA
AACCCTTTGCCTCCCAAAAACCCCAACCATTTAACCAATAATCCCCTTGA
TCCCAATGTTCGGTTTTGCCCGGCCAAACCCGAACCTTTTGAAAGAAAAG
CCGCAAAAAACAATTTCAAAAAAATTAAAAAAAGCGGGGGAAAAAAATTT
TCCT
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