DY304992

Overview
NameDY304992
Unique NameDY304992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY304992 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.398e-13
Identity = 55/147 (37.41%), Postives = 76/147 (51.70%), Query Frame = 2 
Query:  458 RPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT---------SVPTVTYEGRFEILCLSGSFLLAEDGSPRDRTGGVSASLSSPDGHV 868
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV  + +++++R R V +L G GTVS+VTLRQP T             VT  GRFEIL L+G+ +L     P    GG+S  L+   G V
Sbjct:   72 RPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGT-VLPPPAPP--GAGGLSIFLAGGQGQV 212
The following BLAST results are available for this feature:
BLAST of DY304992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH4.398e-1337.41Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1DA10RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304992 ID=DY304992; Name=DY304992; organism=Citrus clementina; type=EST; length=1259bp
GGTGTTAGGGAGATCAGGATCTTGTGTGTATTTAGTTTAAGATTTTAGCT
TAAGTGGCTTAATAGACTCATTTTCTAGCTACCCAAAAAGAAAAAAAATT
CATTTTCTACTTAGTAAATGCATGGACGGAAGAGAAGCTATGGTTGCATC
AGGGGGTGTCTCTGGTCCCTATTACATTCAACAACATAGAGGAGCATTCA
GTGGTTCTCATTCAGCAACACAATCTGGTTTAATGCAAACCCCACCTGGG
TTTAGATCCTCGTCAAATCTTAACATTCCAACTCAACCAAATGTGGGATC
GACATTTGCAGTTGAGCCCAAACATGTCAATTTTGGCCATAACATGAGTG
TGCCATCCGGGGTGCCACTAAGTGATCCAGTGAAGAAGAAGAGAGGTAGA
CCCCGCAAATATGCCCCTGATGGGCAGGTTTCCTTGGGGCTTTCGCCATT
GCCAGCCAGGCCAAAGCGTTCTCCGGCATCTGATTCGCAGGCCTTGAAAC
GGAGTAGAGGGCGGCCTCCTGGGACAGGCAGGAAGCAGCAGTTGGCTACT
CTTGGTGAATGGATGAATAGTTCAGCTGGAATTGCTTTTGCACCGCATGT
GATCTCCATTGGAGTTGGAGAGGACATTGTGGCTAAAATGTTGTCATTTT
CACAACAGAGGCCAAGGGTTGTGTGCATCTTGTCAGGCCGTGGTACAGTT
TCTTCAGTAACACTCCGTCAGCCTGCAACTTCAGTGCCCACCGTCACCTA
TGAGGGCCGTTTCGAGATATTATGCCTGTCTGGTTCATTCTTACTTGCTG
AAGATGGCAGTCCTCGTGATCGAACTGGTGGTGTAAGTGCTTCCCTTTCA
AGTCCTGATGGCCACGTATTCNGGTGGTGGAGTTGCTGTGCTTATCGCAG
CAAGCCCCAGTTCAGTGGTGGTATGCAGTTTTGTATATGGGGGGTTCAAA
AATAAAGAACAAGCCAATTTGCTGCCCCTGAAAAAGAAAAAAAATTCCAA
CCCCCCCCCCGAAATAATAAATCAACCTACCCAAATTTTATCCCCCCTGC
CCTCCCCAAAATTTTCCCCCCCTCCGCAAATGAAAGGCCCCGGGCCCCGG
GTTTTCCAAAACAACTTGAAATCGGAAAAAAACCCCCCACCCCCAAAAAA
TTTGACCCTCGGAACCCTCCGGGGAGAAAAAAAAAATTTTTTGTTGGCCA
AAAAAAAAACACCCGTGGGGGGGGTTTTTTTTTGTTTTAAAAAATATATT
TGGGGTGGT
back to top