DY305011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 1.289e-33 Identity = 92/185 (49.73%), Postives = 111/185 (60.00%), Query Frame = 3 Query: 525 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGL--------RLPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGNGPKPF 1055 DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK+V K+ K + E+ F ++ L ++ +LG+ILGPRG++P PKAG + + + K+ K F KTG PF Sbjct: 115 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVG---------GEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAG-TVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPF 289
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 8.352e-33 Identity = 90/186 (48.39%), Postives = 109/186 (58.60%), Query Frame = 3 Query: 522 RDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGL--------RLPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGNGPKPF 1055 RDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDPKYNDQQLRATVSLPKGTG++V KV K + +D F +++ L ++ LGKILGPRG++PNPKAG + + K+ K F KTG PF Sbjct: 108 RDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVG---------SDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAG-TVTANIPQAIEEFKKGKVEFRADKTGIVHIPF 283
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 3.509e-31 Identity = 81/152 (53.29%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 525 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGL--------RLPALGKILGPRGILPNPKAG 956 DR RSKRFLEIQ LRE KKEYDLKTAISL+K+ + TKF ET EAHFRLNIDPKYNDQQLRATVSLPKGTGK + + K + ED F +++ L ++ +LGKILGPRG++PNPKAG Sbjct: 53 DRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVG---------GEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAG 195
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.359e-19 Identity = 61/169 (36.09%), Postives = 93/169 (55.03%), Query Frame = 3 Query: 537 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGLR-LPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGN 1040 SKR+ E++ L + KEYDL A+ L K++++ KF ET E H + NID + +DQQ+R+T+SLP GTGK V K KK + + K +++ ++ + ++ + LGKILGPRG++PNPKAG N + K+ K+ + KTGN Sbjct: 5 SKRYNEVRKLVDRTKEYDLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHGTGKEVRVLVFAKGEKAEEAKKAGADYVGAEDL-AEKIQKEGFLDFDVAIATPDMMKIIGRLGKILGPRGLMPNPKAGTVTN-DVAAAVKDFKKGRMEIRTDKTGN 171
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_THEAB (50S ribosomal protein L1 OS=Thermosipho africanus (strain TCF52B) GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.529e-18 Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 3 Query: 537 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGLR-LPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGN 1040 SKR+ E++ L + K+YDL AI L K++++ KF ET E H + NID + +DQQ+R+T++LP GTGK V + K K + + K ++++++ + +R + LGKILGPRG++PNPKAG N + K K+ + KTGN Sbjct: 5 SKRYNEVRKLVDRNKDYDLNEAIDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTIALPHGTGKEVKVLVFATGEKAEEAKAAGADYVGAEDL-AEKIQKENFLDFDVAIATPDMMRVIGKLGKILGPRGLMPNPKAGTVTN-DVASAVKEFKKGRMEVRTDKTGN 171
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.691e-17 Identity = 64/170 (37.65%), Postives = 88/170 (51.76%), Query Frame = 3 Query: 534 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGLR-LPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGN 1040 RSKR+LE + L + K Y + AI LLKQM S KF E+ E H + I+P +DQQ+R T+SLP GTGK+V KV K + F V L + + W + +R + LG+ILGPRG++P+PKAG + K K + + KTGN Sbjct: 4 RSKRYLEARKLVDRTKAYTIDEAIELLKQMPSAKFDESIELHIKTGIEPSKSDQQVRGTISLPHGTGKNVKVLVFTRGEKVEEAKAAGADF--VGSDELIQQIQKGWTDFDVAIATPDMMREIGRLGRILGPRGLMPSPKAGTVTT-DVAEAVKAFKAGRVEIKNDKTGN 170
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.884e-17 Identity = 59/149 (39.60%), Postives = 82/149 (55.03%), Query Frame = 3 Query: 534 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGL--------RLPALGKILGPRGILPNPKAG 956 RSKR+ + +L E K Y + A+ LLK++++ KF ETAEAH RLN+DPKY DQQ+RATV LP GTGK++ ++ K S + +D A ++ L L LGKILGPRG++P+PK+G Sbjct: 3 RSKRYQSLCSLIEPKL-YSPQEALKLLKKLATAKFVETAEAHIRLNLDPKYTDQQIRATVVLPHGTGKAI---------RIAVITKQSSHIEGADLV----GSDDLCAQIAQSIINFDCLIATPDMMPTLAKLGKILGPRGLMPSPKSG 137
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_BACP2 (50S ribosomal protein L1 OS=Bacillus pumilus (strain SAFR-032) GN=rplA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 3.241e-17 Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3 Query: 534 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKS 740 + K+++E L E K YD+ A+SL K+ ++ KF T E FRL +DP+ NDQQ+R V LP GTGK+ Sbjct: 4 KGKKYVEAAKLIERTKAYDVAEAVSLTKKANTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKT 72 HSP 2 Score: 32.7278 bits (73), Expect = 3.241e-17 Identity = 10/17 (58.82%), Postives = 16/17 (94.12%), Query Frame = 3 Query: 906 LGKILGPRGILPNPKAG 956 +G++LGP+G++PNPK G Sbjct: 127 IGRVLGPKGLMPNPKTG 143 HSP 3 Score: 27.7202 bits (60), Expect = 3.241e-17 Identity = 22/63 (34.92%), Postives = 30/63 (47.62%), Query Frame = 1 Query: 715 VYPRELENLFKVAVLAQGEKFDEPKNAGADFGGW**LD*TNKRKIH----GFHQLIASPNMKG 891 V P +V V A+GEK E + AGAD+ G D KI F ++A+P+M G Sbjct: 64 VLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVG----DSDYITKIQQGWFEFDVIVATPDMMG 122
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_GEMAT (50S ribosomal protein L1 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.767e-17 Identity = 63/176 (35.80%), Postives = 91/176 (51.70%), Query Frame = 3 Query: 528 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIP-PANCFTKYEGLRLPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGNGPKP 1052 +T K+F R K Y+ K AI+L+KQM+ KF ET E RL +DP++ DQ +R TV LP GTGK++ + KV+ ++ + F V T + +D W+ T + ++ LG++LGPRG++PNPKAG S + SK K F K GN P Sbjct: 2 KTNGKKFRAASEQRVLGKSYEAKQAIALVKQMAFAKFDETVEIAIRLGVDPRHADQVVRGTVVLPAGTGKTMRVLVIATGAKVQEAQEAGADF---VGTEFLQKIKDGWLDFDVMIATPDQMGQIGQLGRVLGPRGLMPNPKAG-TVTFDVSKAVRESKGGKIEFRVDKGGNVHAP 173
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.431e-16 Identity = 60/168 (35.71%), Postives = 85/168 (50.60%), Query Frame = 3 Query: 540 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGLR-LPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGN 1040 K++ E+ L + +K YD+ A+ L+K+ S TKF T E H L IDPK DQ +R TVSLPKGTGK+V K K+ + F + K + W + +R + LGK+LGPRG++P+PKAG + + K K K +TGN Sbjct: 6 KKYKEVLKLVDKQKNYDIDEALDLVKKTSYTKFDGTVELHVLLGIDPKKGDQNVRGTVSLPKGTGKNVRVLVFAEGEKAAQAKQAGADFVGSDDL-IEKINNEGWTDFDVAIATPDIMRKIGRLGKVLGPRGLMPSPKAGTVTD-DVAQAVKEFKAGKVEVRNDRTGN 171 The following BLAST results are available for this feature:
BLAST of DY305011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 165
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305011 ID=DY305011; Name=DY305011; organism=Citrus clementina; type=EST; length=1243bpback to top |