DY305011

Overview
NameDY305011
Unique NameDY305011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305011_ssr25 microsatellite DY305011_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.289e-33
Identity = 92/185 (49.73%), Postives = 111/185 (60.00%), Query Frame = 3
Query:  525 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGL--------RLPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGNGPKPF 1055
            DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK+V         K+   K   +              E+        F  ++ L        ++ +LG+ILGPRG++P PKAG     + +   +  K+ K  F   KTG    PF
Sbjct:  115 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVG---------GEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAG-TVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPF 289          
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.352e-33
Identity = 90/186 (48.39%), Postives = 109/186 (58.60%), Query Frame = 3
Query:  522 RDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGL--------RLPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGNGPKPF 1055
            RDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDPKYNDQQLRATVSLPKGTG++V         KV   K   +              +D        F +++ L        ++  LGKILGPRG++PNPKAG     +     +  K+ K  F   KTG    PF
Sbjct:  108 RDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVG---------SDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAG-TVTANIPQAIEEFKKGKVEFRADKTGIVHIPF 283          
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.509e-31
Identity = 81/152 (53.29%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  525 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGL--------RLPALGKILGPRGILPNPKAG 956
            DR RSKRFLEIQ LRE KKEYDLKTAISL+K+ + TKF ET EAHFRLNIDPKYNDQQLRATVSLPKGTGK +         +    K   +              ED        F +++ L        ++ +LGKILGPRG++PNPKAG
Sbjct:   53 DRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVG---------GEDLIEQIKGGFMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAG 195          
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.359e-19
Identity = 61/169 (36.09%), Postives = 93/169 (55.03%), Query Frame = 3
Query:  537 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGLR-LPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGN 1040
            SKR+ E++ L +  KEYDL  A+ L K++++ KF ET E H + NID + +DQQ+R+T+SLP GTGK V         K    KK  + +         K +++ ++         + ++ +  LGKILGPRG++PNPKAG   N   +   K+ K+ +      KTGN
Sbjct:    5 SKRYNEVRKLVDRTKEYDLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHGTGKEVRVLVFAKGEKAEEAKKAGADYVGAEDL-AEKIQKEGFLDFDVAIATPDMMKIIGRLGKILGPRGLMPNPKAGTVTN-DVAAAVKDFKKGRMEIRTDKTGN 171          
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_THEAB (50S ribosomal protein L1 OS=Thermosipho africanus (strain TCF52B) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.529e-18
Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 3
Query:  537 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGLR-LPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGN 1040
            SKR+ E++ L +  K+YDL  AI L K++++ KF ET E H + NID + +DQQ+R+T++LP GTGK V      +  K    K   + +         K ++++++         + +R +  LGKILGPRG++PNPKAG   N   +   K  K+ +      KTGN
Sbjct:    5 SKRYNEVRKLVDRNKDYDLNEAIDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTIALPHGTGKEVKVLVFATGEKAEEAKAAGADYVGAEDL-AEKIQKENFLDFDVAIATPDMMRVIGKLGKILGPRGLMPNPKAGTVTN-DVASAVKEFKKGRMEVRTDKTGN 171          
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.691e-17
Identity = 64/170 (37.65%), Postives = 88/170 (51.76%), Query Frame = 3
Query:  534 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGLR-LPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGN 1040
            RSKR+LE + L +  K Y +  AI LLKQM S KF E+ E H +  I+P  +DQQ+R T+SLP GTGK+V         KV   K   + F  V    L +  +  W          + +R +  LG+ILGPRG++P+PKAG       +   K  K  +   +  KTGN
Sbjct:    4 RSKRYLEARKLVDRTKAYTIDEAIELLKQMPSAKFDESIELHIKTGIEPSKSDQQVRGTISLPHGTGKNVKVLVFTRGEKVEEAKAAGADF--VGSDELIQQIQKGWTDFDVAIATPDMMREIGRLGRILGPRGLMPSPKAGTVTT-DVAEAVKAFKAGRVEIKNDKTGN 170          
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.884e-17
Identity = 59/149 (39.60%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  534 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGL--------RLPALGKILGPRGILPNPKAG 956
            RSKR+  + +L E K  Y  + A+ LLK++++ KF ETAEAH RLN+DPKY DQQ+RATV LP GTGK++         ++    K  S      +       +D     A     ++ L         L  LGKILGPRG++P+PK+G
Sbjct:    3 RSKRYQSLCSLIEPKL-YSPQEALKLLKKLATAKFVETAEAHIRLNLDPKYTDQQIRATVVLPHGTGKAI---------RIAVITKQSSHIEGADLV----GSDDLCAQIAQSIINFDCLIATPDMMPTLAKLGKILGPRGLMPSPKSG 137          
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_BACP2 (50S ribosomal protein L1 OS=Bacillus pumilus (strain SAFR-032) GN=rplA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.241e-17
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  534 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKS 740
            + K+++E   L E  K YD+  A+SL K+ ++ KF  T E  FRL +DP+ NDQQ+R  V LP GTGK+
Sbjct:    4 KGKKYVEAAKLIERTKAYDVAEAVSLTKKANTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKT 72          

HSP 2 Score: 32.7278 bits (73), Expect = 3.241e-17
Identity = 10/17 (58.82%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  906 LGKILGPRGILPNPKAG 956
            +G++LGP+G++PNPK G
Sbjct:  127 IGRVLGPKGLMPNPKTG 143          

HSP 3 Score: 27.7202 bits (60), Expect = 3.241e-17
Identity = 22/63 (34.92%), Postives = 30/63 (47.62%), Query Frame = 1
Query:  715 VYPRELENLFKVAVLAQGEKFDEPKNAGADFGGW**LD*TNKRKIH----GFHQLIASPNMKG 891
            V P       +V V A+GEK  E + AGAD+ G    D     KI      F  ++A+P+M G
Sbjct:   64 VLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVG----DSDYITKIQQGWFEFDVIVATPDMMG 122          
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_GEMAT (50S ribosomal protein L1 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.767e-17
Identity = 63/176 (35.80%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  528 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIP-PANCFTKYEGLRLPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGNGPKP 1052
            +T  K+F      R   K Y+ K AI+L+KQM+  KF ET E   RL +DP++ DQ +R TV LP GTGK++      +  KV+  ++  + F   V T   +  +D W+       T  +  ++  LG++LGPRG++PNPKAG       S   + SK  K  F   K GN   P
Sbjct:    2 KTNGKKFRAASEQRVLGKSYEAKQAIALVKQMAFAKFDETVEIAIRLGVDPRHADQVVRGTVVLPAGTGKTMRVLVIATGAKVQEAQEAGADF---VGTEFLQKIKDGWLDFDVMIATPDQMGQIGQLGRVLGPRGLMPNPKAG-TVTFDVSKAVRESKGGKIEFRVDKGGNVHAP 173          
BLAST of DY305011 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.431e-16
Identity = 60/168 (35.71%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  540 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSV*GGCSCSR*KVR*TKKCRSRFWWVVMT*LNK*KEDSWIPPANCFTKYEGLR-LPALGKILGPRGILPNPKAGYCYN*HTSGHKKNSKREKFNFEQKKTGN 1040
            K++ E+  L + +K YD+  A+ L+K+ S TKF  T E H  L IDPK  DQ +R TVSLPKGTGK+V         K    K+  + F       + K   + W          + +R +  LGK+LGPRG++P+PKAG   +   +   K  K  K      +TGN
Sbjct:    6 KKYKEVLKLVDKQKNYDIDEALDLVKKTSYTKFDGTVELHVLLGIDPKKGDQNVRGTVSLPKGTGKNVRVLVFAEGEKAAQAKQAGADFVGSDDL-IEKINNEGWTDFDVAIATPDIMRKIGRLGKVLGPRGLMPSPKAGTVTD-DVAQAVKEFKAGKVEVRNDRTGN 171          
The following BLAST results are available for this feature:
BLAST of DY305011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
RK1_SPIOL1.289e-3349.7350S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_ARATH8.352e-3348.3950S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_PEA3.509e-3153.2950S ribosomal protein L1, chloroplastic (Fragment)... [more]
RL1_THEM42.359e-1936.0950S ribosomal protein L1 OS=Thermosipho melanesien... [more]
RL1_THEAB1.529e-1835.5050S ribosomal protein L1 OS=Thermosipho africanus ... [more]
RL1_KOSOT1.691e-1737.6550S ribosomal protein L1 OS=Kosmotoga olearia (str... [more]
RK1_CYAME2.884e-1739.6050S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RL1_BACP23.241e-1746.3850S ribosomal protein L1 OS=Bacillus pumilus (stra... [more]
RL1_GEMAT3.767e-1735.8050S ribosomal protein L1 OS=Gemmatimonas aurantiac... [more]
RL1_PETMO1.431e-1635.7150S ribosomal protein L1 OS=Petrotoga mobilis (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE09RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305011 ID=DY305011; Name=DY305011; organism=Citrus clementina; type=EST; length=1243bp
TGCCGAATTCGGCACGAGGTCTTATCTTCTTCTTCTCGGACTTTTTTTCT
GGGTAGGTATAGCAATTTGCAATAGCAGTGCATATATACAAATTACAAAA
CTCAAAAAGGTTCCAATACTGTATCCGCAAAATGGCGACATGTGGCACTA
CTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAGTACACCCGCAA
GACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCCTCGAAGACTGC
GGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGGGGAGAGGAGGG
CGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACAAAAATGGGCTT
CCTGGACACATGCTGGCGGCTGCTTCTGCTGTCGAAGCTGATACTGACTT
GGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGCTGAAGGAGCAA
CTGCTACTGCTACTGCTACTGCTACTATTTCAACTAAGCCTAAGAAAGGC
AAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCTAAAAGATTCCT
GGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGATTTGAAGACGG
CAATATCTTTGTTGAAGCAGATGTCAAGTACAAAGTTCACGGAAACAGCT
GAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAATGATCAACAGCT
TAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATCTGTTTAAGGTG
GCTGTTCTTGCTCAAGGTGAAAAGTTCGATGAACCAAAAAATGCAGGAGC
AGATTTTGGTGGGTGGTGATGACTTGATTGAACAAATAAAAGGAAGATTC
ATGGATTCCACCAGCTAATTGCTTCACCAAATATGAAGGGTTAAGGTTGC
CAGCCCTAGGAAAAATTCTTGGACCACGGGGAATCTTGCCAAATCCTAAA
GCCGGTTACTGTTACAACTAACATACCTCAGGGCATAAAAAAAATTCAAA
AAGGGAAAAGTTTAATTTTGAACAAAAAAAAACTGGGAATGGTCCCAAAC
CCTTTTTTGGGAAACCTGAAATTTTTCTGAAAAAAGAACCTTCTCCCTAA
ACATTTTTTTCCCTTTCTTTTTTAAATAAAATTTTAAGGCAAAAAAAAAG
CCCAAAAAAGGGGGGCCCAAAAAAAAAAGATTTATTTGTGAAGAAAAAAA
AGGGTTCTTTTCACAATTTTTCTTCTTTCCCCCTCTCAAACAC
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