DY305107

Overview
NameDY305107
Unique NameDY305107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305107 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.128e-16
Identity = 66/173 (38.15%), Postives = 88/173 (50.87%), Query Frame = 2 
Query:  458 RPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT---------SVPTVTYEGRFEILCLSGSFLLAXDGSPRDRTGGVSASLFSPDGHVFGGG-VAVLIAASPSSGGGKQFLNLV 943
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV  + +++++R R V +L G GTVS+VTLRQP T             VT  GRFEIL L+G+ +L     P    GG+S  L    G V GG  VA LIA++P       F N V
Sbjct:   72 RPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGT-VLPPPAPP--GAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAV 238
The following BLAST results are available for this feature:
BLAST of DY305107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH7.128e-1638.15Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2BG05RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305107 ID=DY305107; Name=DY305107; organism=Citrus clementina; type=EST; length=1243bp
GGTGTTAGGGAGATCAGGATCTTGTGTGTATTTAGTTTAAGATTTTAGCT
TAAGTGGCTTAATAGACTCATTTTCTAGCTACCCAAAAAGAAAAAAAATT
CATTTTCTACTTAGTAAATGCATGGACGGAAGAGAAGCTATGGTTGCATC
AGGGGGTGTCTCTGGTCCCTATTACATTCAACAACATAGAGGAGCATTCA
GTGGTTCTCATTCAGCAACACAATCTGGTTTAATGCAAACCCCACCTGGG
TTTAGATCCTCGTCAAATCTTAACATTCCAACTCAACCAAATGTGGGATC
GACATTTGCAGTTGAGCCCAAACATGTCAATTTTGGCCATAACATGAGTG
TGCCATCCGGGGTGCCACTAAGTGATCCAGTGAAGAAGAAGAGAGGTAGA
CCCCGCAAATATGCCCCTGATGGGCAGGTTTCCTTGGGGCTTTCGCCATT
GCCAGCCAGGCCAAAGCGTTCTCCGGCATCTGATTCGCAGGCCTTGAAAC
GGAGTAGAGGGCGGCCTCCTGGGACAGGCAGGAAGCAGCAGTTGGCTACT
CTTGGTGAATGGATGAATAGTTCAGCTGGAATTGCTTTTGCACCGCATGT
GATCTCCATTGGAGTTGGAGAGGACATTGTGGCTAAAATGTTGTCATTTT
CACAACAGAGGCCAAGGGTTGTGTGCATCTTGTCAGGCCGTGGTACAGTT
TCTTCAGTAACACTCCGTCAGCCTGCAACTTCAGTGCCCACCGTCACCTA
TGAGGGCCGTTTCGAGATATTATGCCTGTCTGGTTCATTCTTACTTGCTG
ANGATGGCAGTCCTCGTGATCGAACTGGTGGTGTAAGTGCTTCCCTTTTC
AGTCCTGATGGTCACGTATTCGGTGGGGGAGTTGCTGTGCTTATCGCAGC
AAGCCCCAGTTCAGGTGGTGGTAAGCAGTTTTTGAATTTGGTGGTTCTAA
AAAAAAGACCAAGCCAGTTTGCTGCCCCTGAAAATGAAAAAAATTCCACC
CCGCCACCCAAAAAATAAAACACCTTACCAAAATTTATTCCCCCGGGCTC
CCCAAAAATTTTCCCCCCTCCGGCAAAGAAAGGCCGGGGCCCCGGTTTTT
TAAAAAAGCTTAATTCCGGAAAAACCCCCCCCCCCCCCAAAATTTTTGAC
CCCGGAAACCCGGGGGAAAAAGAAAAAAATTTTGTCCTCCGACACAACAA
AAAAACACCAGGGGGGGTTGTGTTTTTTTTTATAAAACAAATA
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