DY305109

Overview
NameDY305109
Unique NameDY305109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length957
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5805 contig Ccv1_Contig5805:796..1751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305109 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:  207 RKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGN 416
            +K R  WS ELH++F+ A+ QLG    A PK+I ELMNV GLT + V SHLQKYR++ RR      + GN
Sbjct:  236 KKPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGN 304
The following BLAST results are available for this feature:
BLAST of DY305109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARR1_ARATH6.244e-1151.43Two-component response regulator ARR1 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2BG08RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305109 ID=DY305109; Name=DY305109; organism=Citrus clementina; type=EST; length=957bp
GCGTGGTTGAAGTGAAGAGAAATGGAAGTGGAGGTGCATTTCAGCCATTT
CACAGAGAAAAATGTGGGGAAAAGAAGGACCAGCAACAAAGACTGGGAAA
AGTTAATACTCCGGTCCCAACGGCTGCTGCTAGTTCCACAACGGACACTG
CGGTTGGTAAAGGTGAAAAAAATGATAAAGATAAAGATAAAGAGGGCCAG
CCTCAAAGAAAGCAAAGGCGCTCTTGGTCGCCTGAATTGCATAGACGGTT
CTTGCATGCTCTTCAACAACTCGGTGGCTCACATGCTGCTACGCCTAAGC
AAATTAGGGAGCTAATGAATGTTGATGGGCTTACTAATGATGAAGTCAAG
AGCCATCTACAGAAATATCGTCTGCATACAAGGAGACCAAGTCCGGCAAT
GCACAACGGTGGCAACCCACAAGCGCCCCAATTTGTGGTGGTCGGAGGCA
TTTGGGTGCAAGCGCCTGACTATGCAGCAGTTGCTGCCAAAGCCCCAGGG
GAAGCAGGCTCTATTGCCACAAGCAACGGAATCTATGCACCGGTAGCTGC
ACCACCGCCTGCAGTACCTCAATCTTCAGCATCAGTAGTGCAAATATCTC
AACAGACACAATCCGAGCACTTACAATCAGAAGAAAGGGGCAGTCATAGT
GACGGCGGCCATCATGCTAATTCTCCGGCTACATCTTCCTCTACGCATAC
CACCACAACTTCCCCTGTGTTCTAGCATCCGTAGAAACAGAATGGTGTAA
AATTTTTGTAACAAAGCTTGCTAGTAGAAATTTCTATATCACATGACAAT
TTTTCTTCTTGTTTTTGGAGTGGTAAACTTGATAAGAGTTATAGCTGGAT
ACATTGGCAAGTGACTGTCAGCCTTCCTTGATAAGTATCCTTGTAGTCCA
CCCCCAAATGGTTCCCTAAACTAATATTAGTGAAGGAATAAATTTCCATT
TACCGGC
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