DY305116

Overview
NameDY305116
Unique NameDY305116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1211
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305116 vs. ExPASy Swiss-Prot
Match: FB189_ARATH (Putative F-box protein At3g28280 OS=Arabidopsis thaliana GN=At3g28280 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.128e-11
Identity = 66/250 (26.40%), Postives = 110/250 (44.00%), Query Frame = 1 
Query:  145 LPKDCMLKILIRLPLQSLSSTKFVCKPWYNMITSDNFVDVHFRRSESVLIFQKPVVSR----TLTSYQPEKSNTFSVEASLQPRPSYSSIFDNRVRRKFYIQFMEFKGGKIETERYNLCCLGKIRATCNGLILLDND---LKKGGLIVMNPVTRKLIALPAGTLCRPHNESFGFAL---NEVTGDYKVVHLFRDELGYVSCETLNLGTRKWREVNGPAFGVFGWFGYRPVSAIGALHWVXQINHSDCIVV 864
            LP+D +  IL++LP++  ++ K VC  W +M+ S  F D+     ++       ++SR     +  Y     NT+ ++ SL                 FYI    F   K ET+R N        +T  G+IL+  +   +K   L V NPV+++ + +P+    +  +   G A    N V  DYKVV LF     +      +  T  W  +N     V G+    P+S  G++HW+   +HS+ + V
Sbjct:    4 LPEDLLAMILVKLPIKIFTTFKIVCTQWESMVDSPYFRDLFLSIHQNSHYSSWSILSRCDEEVIAHY---GCNTWGLQRSLH----------------FYIS--SFLTKKFETQRNNYKVWS--YSTDVGMILISENCICVKNRSLYVANPVSQECVEIPSHGYLKKVSCPLGIATRTENGVLLDYKVV-LFNGSDTFRRLLIYSSQTGMW-SINTVDLTVSGFHNQSPISLHGSIHWIASTSHSEDVAV 228
The following BLAST results are available for this feature:
BLAST of DY305116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB189_ARATH5.128e-1126.40Putative F-box protein At3g28280 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2CA02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305116 ID=DY305116; Name=DY305116; organism=Citrus clementina; type=EST; length=1211bp
GGCAAAGGCAAAATGGCCAAATCAATTGGAAGCAGGAATGCAAACTTGTT
GAGATTGGTAGAAGAGAGAGCATTGTCGAAGCAAGTGGAAGGGAAGAAGG
CGGAGGAACAACACGAGGAACAACAAGAAACAGTACTCCCTTATCTTCCT
AAAGACTGTATGTTGAAAATTCTTATTCGACTTCCTCTTCAATCTCTTTC
GAGCACGAAGTTTGTCTGTAAACCTTGGTACAACATGATTACCAGTGACA
ATTTCGTGGATGTGCATTTTCGCCGCTCTGAATCTGTCTTGATCTTTCAA
AAACCAGTTGTAAGTCGTACTCTGACATCATATCAACCAGAAAAATCGAA
CACATTTTCAGTTGAAGCAAGTCTACAACCCAGACCTTCCTATTCTTCAA
TTTTTGACAATCGAGTGAGAAGGAAATTTTATATCCAGTTCATGGAATTT
AAAGGAGGAAAGATTGAAACTGAAAGGTATAATCTTTGCTGCTTAGGCAA
AATTAGAGCTACGTGCAACGGCCTTATTTTGCTTGATAATGATCTGAAAA
AAGGAGGGCTTATAGTGATGAATCCTGTGACAAGGAAATTAATTGCACTT
CCTGCAGGTACTCTATGTCGTCCCCATAATGAATCCTTTGGCTTTGCACT
AAATGAAGTTACCGGTGATTATAAAGTGGTGCATTTGTTTCGAGATGAGT
TGGGATATGTCAGTTGTGAGACACTAAATCTGGGGACGAGAAAGTGGAGA
GAGGTGAACGGACCCGCATTTGGGGTCTTTGGTTGGTTTGGCTACAGACC
TGTTTCAGCTATCGGAGCTTTGCATTGGGTCCNTCAGATCAATCATAGCG
ATTGCATAGTGGTCATGGAAGTGAACAGCGAAAAGTTTCAAACCATCTCT
CTCCCAAAGTCTTGTACAACTCATGATGGAATTGTCAAAATGGGTGGGTT
TCCTTTTGTTTCGTTGCACATGATTATCAAGAATTGGAACCAAGACTTTT
TGAATTTTAAAGGGGCTTATGGCAAGGAGGGCCTGGACAAAATTACAAAG
AAATCTTGAGAAAGGTTAATTGGAATAGGGTTCCCCCATTTCTGGTTTAA
AAAAATCCGGTGGGAAAAAATGGGTTTTTTCCGGGGAGGGAAAGAAAAAA
AGGGCTCTCTTTTTTTTTTGCTTTTATTAATTTTTTCCCCCCACCAAAAA
AAAGGGGGGGG
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