DY305124

Overview
NameDY305124
Unique NameDY305124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1200
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305124 vs. ExPASy Swiss-Prot
Match: KCO1_ARATH (Calcium-activated outward-rectifying potassium channel 1 OS=Arabidopsis thaliana GN=KCO1 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 1.595e-55
Identity = 100/192 (52.08%), Postives = 130/192 (67.71%), Query Frame = 1
Query:  235 MASNGANQPLL-SGFVDSTSQTNNKDA----PKRRRLRRCRSAPQTDVAALD---INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIEPTK 786
            M+S+ A  PLL +  +D+ +Q  N ++     ++RRLRR RSAP+ D    D   I+E         +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTMTTVGYGDLVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  GPTDILKE+   K
Sbjct:    1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNK 192          

HSP 2 Score: 54.299 bits (129), Expect = 1.595e-55
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 2
Query:  866 KMSFVDAFYCVCSTITTLSYGDKTFSTTEGRGFGCKFGFQVITRNLYKVFFLNLWPNFKNEKKKKRGLLPIWV 1084
            KM  + AFYCVCST+TTL YGDK+F++  GR F     F ++T ++    F  L+    N + K+R L+  WV
Sbjct:  220 KMPVISAFYCVCSTVTTLGYGDKSFNSEAGRLFAV---FWILTSSICLAQFF-LYVAELNTENKQRALVK-WV 287          

HSP 3 Score: 28.1054 bits (61), Expect = 1.595e-55
Identity = 14/31 (45.16%), Postives = 16/31 (51.61%), Query Frame = 3
Query:  777 TNKVRYKCXXXXXXXXXXXXXGDIFLGVVEK 869
            TNK+RYKC             G IFL +VEK
Sbjct:  190 TNKLRYKCYATCLVLVVLFIVGTIFLVMVEK 220          
BLAST of DY305124 vs. ExPASy Swiss-Prot
Match: KCO4_ARATH (Putative outward-rectifying potassium channel 4 OS=Arabidopsis thaliana GN=KCO4 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.542e-16
Identity = 32/108 (29.63%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  448 LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKE 771
            ++ L  YL  G  ++     Q  G +TN  +D+ YF IVT +TVGYGD+VP++  +K+L+   V TG+  +   L++   +++  QE  ++  +++ +     D + E
Sbjct:   39 MILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKTRNRAIRDHIAE 146          

HSP 2 Score: 41.5874 bits (96), Expect = 2.542e-16
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 2
Query:  866 KMSFVDAFYCVCSTITTLSYGDKTFSTTEGRGF 964
            ++ ++D+ Y    ++TT+ YGDKTF T EGRGF
Sbjct:  179 RLDWLDSVYLSVISVTTVGYGDKTFKTVEGRGF 211          
BLAST of DY305124 vs. ExPASy Swiss-Prot
Match: KCO6_ARATH (Probable calcium-activated outward-rectifying potassium channel 6 OS=Arabidopsis thaliana GN=KCO6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.167e-15
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  328 LRRCRSAPQTDVAA---LDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHR 735
            L R ++AP   V       I +KD T  S S+        ++    L  YL  G L ++         +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS    Y++D QE  ++ +  R
Sbjct:  118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV-------RQAFALLVVYLSLGVLIYWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKR 249          
BLAST of DY305124 vs. ExPASy Swiss-Prot
Match: KCO5_ARATH (Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic OS=Arabidopsis thaliana GN=KCO5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.685e-14
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 1
Query:  280 DSTSQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQ 741
            DS S   N+   + R L R R+AP   V   D+  K       S   K     ++ +  L  YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ +  FV  G G + + LS   +Y++D QE +++  +   Q
Sbjct:   68 DSDSDETNRFLSQTRPLHRSRTAPAM-VIIKDLRTKPPETKKPSPVSKSI--IRQAIFLLIVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQ 218          
BLAST of DY305124 vs. ExPASy Swiss-Prot
Match: KCO2_ARATH (Probable calcium-activated outward-rectifying potassium channel 2 OS=Arabidopsis thaliana GN=KCO2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.434e-13
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  442 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQE 708
            + +  L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P+SVV+KL S  FV  G G + + LS    Y++D QE
Sbjct:  148 QAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQE 236          
The following BLAST results are available for this feature:
BLAST of DY305124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KCO1_ARATH1.595e-5552.08Calcium-activated outward-rectifying potassium cha... [more]
KCO4_ARATH2.542e-1629.63Putative outward-rectifying potassium channel 4 OS... [more]
KCO6_ARATH1.167e-1535.25Probable calcium-activated outward-rectifying pota... [more]
KCO5_ARATH1.685e-1432.26Probable calcium-activated outward-rectifying pota... [more]
KCO2_ARATH2.434e-1340.45Probable calcium-activated outward-rectifying pota... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2CB03RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305124 ID=DY305124; Name=DY305124; organism=Citrus clementina; type=EST; length=1200bp
TGCCTAATTCGGCACGAGGCAACACACTCACTTCATAAAGTTTCTTCCTT
GATCTGGGGGTGGTCTTGTGTCAGCTTGATAATGAACTCTAGAAGAATAT
AAACTGATTTTCCACTGGCAATTATGTTTATAATGTAAAGTTAACTCCCC
AGAAGTATTGTATATCATCTGATATCCTTGACAGTGACTGTGTTCATAAT
TCTAAAGGTCTGAGTCCGCTTTTGCTATCCTCTAATGGCCTCCAATGGTG
CAAATCAGCCGCTGCTCTCAGGATTTGTTGATTCAACGTCTCAAACAAAT
AATAAAGATGCTCCCAAGAGAAGAAGGCTTCGTCGGTGTAGAAGTGCTCC
CCAGACTGATGTTGCTGCTCTAGACATAAATGAAAAAGACTCAACTCACC
TTTCTGAGTCCCTTTTTGGCAAACCCCGCCCAAATTTTAAGAGGGTACTT
GTCTACCTGGCTGCCTACCTTGGTGGGGGGTCATTATCCTTCTATGCTGT
CAACAGTCAAATCGAAGGACTAAAAACCAATGAAATTCTAGATTCTATTT
ATTTCTGCATCGTGACAATGACCACTGTAGGGTATGGAGACCTTGTGCCT
AATAGTGTCGTTTCGAAACTACTTTCCTGTGCTTTTGTTTTCACAGGGAT
GGGTCTAGTTGGTCTGTTTCTGAGCAAAGCAGCCGACTATCTGGTCGACA
AGCAGGAAATATTGCTGGTTAAAGCCCTACACAGGTATCAAAAAGTTGGC
CCGACTGATATTCTAAAGGAGATTGAACCAACAAAGTGAGATACAAATGC
ATCATCATGTTGGTCCTTGAGTTGGTTCTCATTCTCGTTGGGGACATCTT
CCTGGGTGTGGTTGAAAAATGAGCTTTGTTGATGCGTTCTATTGTGTTTG
TTCTACCATCACCACCTTAAGCTATGGTGACAAGACCTTCTCAACTACGG
AAGGGCGTGGCTTTGGGTGTAAGTTTGGATTCCAAGTAATAACTAGGAAC
CTTTACAAAGTTTTCTTTCTAAACCTTTGGCCAAATTTCAAAAACGAAAA
AAAAAAAAAAAGGGGACTCCTTCCAATTTGGGTTTTCTTACTCCCAAAAA
AAAACACCCACCGTTTGAATTTTGGAGAGCACACCTGAAAATATTGGAAA
AAAAAAAAGGGGGGGTTTTTGTCCCGGTGCGCGCTGCCGGTAAAATTTAC
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