DY305141

Overview
NameDY305141
Unique NameDY305141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1223
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305141 vs. ExPASy Swiss-Prot
Match: KCO1_ARATH (Calcium-activated outward-rectifying potassium channel 1 OS=Arabidopsis thaliana GN=KCO1 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 8.769e-51
Identity = 114/227 (50.22%), Postives = 148/227 (65.20%), Query Frame = 1
Query:  235 MASNGANQPLL-SGFVDSTSQTNNKDA----PKRRRLRRCRSAPQTDVAALD---INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCXXXXXXXXXXXXXXTSFLVVGEEMSFVDAF 891
            M+S+ A  PLL +  +D+ +Q  N ++     ++RRLRR RSAP+ D    D   I+E         +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTMTTVGYGDLVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  GPTDILKE+ TNK+RYKC              T FLV+ E+M  + AF
Sbjct:    1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNKLRYKCYATCLVLVVLFIVGTIFLVMVEKMPVISAF 227          
BLAST of DY305141 vs. ExPASy Swiss-Prot
Match: KCO5_ARATH (Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic OS=Arabidopsis thaliana GN=KCO5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.148e-16
Identity = 61/217 (28.11%), Postives = 102/217 (47.00%), Query Frame = 1
Query:  280 DSTSQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKAL--------HRYQKVGPTDILKEIETNKVRYKCXXXXXXXXXXXXXXTSFLVVG--EEMSFVDAFQL 897
            DS S   N+   + R L R R+AP   V   D+  K       S   K     ++ +  L  YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ +  FV  G G + + LS   +Y++D QE +++  +        H + +    D + + E  ++R +                  LV+   EE+ FVD+  L
Sbjct:   68 DSDSDETNRFLSQTRPLHRSRTAPAM-VIIKDLRTKPPETKKPSPVSKSI--IRQAIFLLIVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMRIRMKVCLALCVVVLCIGVGALVLHFVEELGFVDSVYL 280          
BLAST of DY305141 vs. ExPASy Swiss-Prot
Match: KCO6_ARATH (Probable calcium-activated outward-rectifying potassium channel 6 OS=Arabidopsis thaliana GN=KCO6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.196e-15
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  328 LRRCRSAPQTDVAA---LDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHR 735
            L R ++AP   V       I +KD T  S S+        ++    L  YL  G L ++         +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS    Y++D QE  ++ +  R
Sbjct:  118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV-------RQAFALLVVYLSLGVLIYWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKR 249          
BLAST of DY305141 vs. ExPASy Swiss-Prot
Match: KCO2_ARATH (Probable calcium-activated outward-rectifying potassium channel 2 OS=Arabidopsis thaliana GN=KCO2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.494e-13
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  442 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQE 708
            + +  L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P+SVV+KL S  FV  G G + + LS    Y++D QE
Sbjct:  148 QAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQE 236          
BLAST of DY305141 vs. ExPASy Swiss-Prot
Match: KCO4_ARATH (Putative outward-rectifying potassium channel 4 OS=Arabidopsis thaliana GN=KCO4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.787e-11
Identity = 39/153 (25.49%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  448 LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCXXXXXXXXXXXXXXTSFLVVGEEMSFVDAFQLCFV 906
            ++ L  YL  G  ++     Q  G +TN  +D+ YF IVT +TVGYGD+VP++  +K+L+   V TG+  +   L++   +++  QE  ++  +++ +     D + E    ++++K                 FL V E + ++D+  L  +
Sbjct:   39 MILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKTRNRAIRDHIAEDGKIRLKWKLCLAFCAVGLCVGSGALFLHVFERLDWLDSVYLSVI 191          
The following BLAST results are available for this feature:
BLAST of DY305141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KCO1_ARATH8.769e-5150.22Calcium-activated outward-rectifying potassium cha... [more]
KCO5_ARATH3.148e-1628.11Probable calcium-activated outward-rectifying pota... [more]
KCO6_ARATH1.196e-1535.25Probable calcium-activated outward-rectifying pota... [more]
KCO2_ARATH2.494e-1340.45Probable calcium-activated outward-rectifying pota... [more]
KCO4_ARATH1.787e-1125.49Putative outward-rectifying potassium channel 4 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CE02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305141 ID=DY305141; Name=DY305141; organism=Citrus clementina; type=EST; length=1223bp
TGCCGAATTCGGCACGAGGCAACACACTCACTTCATAAAGTTTCTTCCTT
GATCTGGGGGTGGTCTTGTGTCAGCTTGATAATGAACTCTAGAAGAATAT
AAACTGATTTTCCACTGGCAATTATGTTTATAATGTAAAGTTAACTCCCC
AGAAGTATTGTATATCATCTGATATCCTTGACAGTGACTGTGTTCATAAT
TCTAAAGGTCTGAGTCCGCTTTTGCTATCCTCTAATGGCCTCCAATGGTG
CAAATCAGCCGCTGCTCTCAGGATTTGTTGATTCAACGTCTCAAACAAAT
AATAAAGATGCTCCCAAGAGAAGAAGGCTTCGTCGGTGTAGAAGTGCTCC
CCAGACTGATGTTGCTGCTCTAGACATAAATGAAAAAGACTCAACTCACC
TTTCTGAGTCCCTTTTTGGCAAACCCCGCCCAAATTTTAAGAGGGTACTT
GTCTACCTGGCTGCCTACCTTGGTGGGGGGTCATTATCCTTCTATGCTGT
CAACAGTCAAATCGAAGGACTAAAAACCAATGAAATTCTAGATTCTATTT
ATTTCTGCATCGTGACAATGACCACTGTAGGGTATGGAGACCTTGTGCCT
AATAGTGTCGTTTCGAAACTACTTTCCTGTGCTTTTGTTTTCACAGGGAT
GGGTCTAGTTGGTCTGTTTCTGAGCAAAGCAGCCGACTATCTGGTCGACA
AGCAGGAAATATTGCTGGTTAAAGCCCTACACAGGTATCAAAAAGTTGGC
CCGACTGATATTCTAAAGGAGATTGAAACCAACAAAGTGAGATACAAATG
CATCATCATGTTGGGTCTTGAGTTGGGTCTCATTCTCGTTGGGACATCTT
TCCTGGTTGTGGGTGAAGAAATGAGCTTTGTTGATGCGTTTCAATTGTGT
TTTGTCTAACCTCACCACTTTAAGCTATGGGTGACAAGAAGCTCTCAACT
ACGGGAGGGCCTGCTTTTGGTGGAATTTGGAATTTCCAAATAAAACTAAG
AACCTTAACAACAATTTCAACCTAAACTTTTCCCAAATTTCAAAACTGAA
AAAAAAAAAAAAAGGGAATCCGTTCAAATTGGGGTTTTTAATTCCAAAAA
AAAAACCCCCCGGTTTAAATTTGGGAAGCAAGCTTGGAAATTGTAAAAAA
AAAAAAAGGGGGGGTTGTTCCAAGGGGGCGTGGGCTGAAAATTTTCTAAA
TAAAAAAAATAAATAAACACCCT
back to top